BMRB Entry 50091

Name: Fce4 domain of Immunoglobulin E
Published: 2020-11-18

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50091

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Fce4 domain of Immunoglobulin E

Deposition date:

2019-11-18

Original release date:

2020-11-18

Authors:

Benjamin, Stefi; McDonnell, James

Citation:

Citation: Benjamin, Stefi; Creeke, Paul; Henry, Alistair; McDonnell, James. "NMR backbone assignment of the Ce4 domain of immunoglobulin E" Biomol. NMR Assign. 14, 151-155 (2020).
PubMed: 32108310

Assembly members:

Assembly members:
entity_1, polymer, 130 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET15a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GSSHHHHHHSSGLVPRGSHM GPRAAPEVYAFATPEWPGSR DKRTLACLIQNFMPEDISVQ WLHNEVQLPDARHSTTQPRK TKGSGFFVFSRLEVTRAEWE QKDEFICRAVHEAASPSQTV QRAVSVNPGK

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	338
15N chemical shifts	103
1H chemical shifts	103

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Fce4, chain 1	1
2	Fce4, chain 2	1

Entities:

Entity 1, Fce4, chain 1 130 residues - Formula weight is not available

The second number is the residue author seq code and it is the residue number in the context of whole Immunoglobulin E.

1	GLY	SER	SER	HIS	HIS	HIS	HIS	HIS	HIS	SER
2	SER	GLY	LEU	VAL	PRO	ARG	GLY	SER	HIS	MET
3	GLY	PRO	ARG	ALA	ALA	PRO	GLU	VAL	TYR	ALA
4	PHE	ALA	THR	PRO	GLU	TRP	PRO	GLY	SER	ARG
5	ASP	LYS	ARG	THR	LEU	ALA	CYS	LEU	ILE	GLN
6	ASN	PHE	MET	PRO	GLU	ASP	ILE	SER	VAL	GLN
7	TRP	LEU	HIS	ASN	GLU	VAL	GLN	LEU	PRO	ASP
8	ALA	ARG	HIS	SER	THR	THR	GLN	PRO	ARG	LYS
9	THR	LYS	GLY	SER	GLY	PHE	PHE	VAL	PHE	SER
10	ARG	LEU	GLU	VAL	THR	ARG	ALA	GLU	TRP	GLU
11	GLN	LYS	ASP	GLU	PHE	ILE	CYS	ARG	ALA	VAL
12	HIS	GLU	ALA	ALA	SER	PRO	SER	GLN	THR	VAL
13	GLN	ARG	ALA	VAL	SER	VAL	ASN	PRO	GLY	LYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HCACO	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 50091

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	GLY	SER	SER	HIS	HIS	HIS	HIS	HIS	HIS	SER
2	SER	GLY	LEU	VAL	PRO	ARG	GLY	SER	HIS	MET
3	GLY	PRO	ARG	ALA	ALA	PRO	GLU	VAL	TYR	ALA
4	PHE	ALA	THR	PRO	GLU	TRP	PRO	GLY	SER	ARG
5	ASP	LYS	ARG	THR	LEU	ALA	CYS	LEU	ILE	GLN
6	ASN	PHE	MET	PRO	GLU	ASP	ILE	SER	VAL	GLN
7	TRP	LEU	HIS	ASN	GLU	VAL	GLN	LEU	PRO	ASP
8	ALA	ARG	HIS	SER	THR	THR	GLN	PRO	ARG	LYS
9	THR	LYS	GLY	SER	GLY	PHE	PHE	VAL	PHE	SER
10	ARG	LEU	GLU	VAL	THR	ARG	ALA	GLU	TRP	GLU
11	GLN	LYS	ASP	GLU	PHE	ILE	CYS	ARG	ALA	VAL
12	HIS	GLU	ALA	ALA	SER	PRO	SER	GLN	THR	VAL
13	GLN	ARG	ALA	VAL	SER	VAL	ASN	PRO	GLY	LYS

1	GLY	SER	SER	HIS	HIS	HIS	HIS	HIS	HIS	SER
2	SER	GLY	LEU	VAL	PRO	ARG	GLY	SER	HIS	MET
3	GLY	PRO	ARG	ALA	ALA	PRO	GLU	VAL	TYR	ALA
4	PHE	ALA	THR	PRO	GLU	TRP	PRO	GLY	SER	ARG
5	ASP	LYS	ARG	THR	LEU	ALA	CYS	LEU	ILE	GLN
6	ASN	PHE	MET	PRO	GLU	ASP	ILE	SER	VAL	GLN
7	TRP	LEU	HIS	ASN	GLU	VAL	GLN	LEU	PRO	ASP
8	ALA	ARG	HIS	SER	THR	THR	GLN	PRO	ARG	LYS
9	THR	LYS	GLY	SER	GLY	PHE	PHE	VAL	PHE	SER
10	ARG	LEU	GLU	VAL	THR	ARG	ALA	GLU	TRP	GLU
11	GLN	LYS	ASP	GLU	PHE	ILE	CYS	ARG	ALA	VAL
12	HIS	GLU	ALA	ALA	SER	PRO	SER	GLN	THR	VAL
13	GLN	ARG	ALA	VAL	SER	VAL	ASN	PRO	GLY	LYS

1	GLY	SER	SER	HIS	HIS	HIS	HIS	HIS	HIS	SER
2	SER	GLY	LEU	VAL	PRO	ARG	GLY	SER	HIS	MET
3	GLY	PRO	ARG	ALA	ALA	PRO	GLU	VAL	TYR	ALA
4	PHE	ALA	THR	PRO	GLU	TRP	PRO	GLY	SER	ARG
5	ASP	LYS	ARG	THR	LEU	ALA	CYS	LEU	ILE	GLN
6	ASN	PHE	MET	PRO	GLU	ASP	ILE	SER	VAL	GLN
7	TRP	LEU	HIS	ASN	GLU	VAL	GLN	LEU	PRO	ASP
8	ALA	ARG	HIS	SER	THR	THR	GLN	PRO	ARG	LYS
9	THR	LYS	GLY	SER	GLY	PHE	PHE	VAL	PHE	SER
10	ARG	LEU	GLU	VAL	THR	ARG	ALA	GLU	TRP	GLU
11	GLN	LYS	ASP	GLU	PHE	ILE	CYS	ARG	ALA	VAL
12	HIS	GLU	ALA	ALA	SER	PRO	SER	GLN	THR	VAL
13	GLN	ARG	ALA	VAL	SER	VAL	ASN	PRO	GLY	LYS