BMRB Entry 50404

Name: NMR assignments of the FinO domain in RNA chaperone RocC (repressor of competence)
Published: 2021-06-30

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50404

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignments of the FinO domain in RNA chaperone RocC (repressor of competence)

Deposition date:

2020-07-22

Original release date:

2021-06-30

Authors:

Eidelpes, Reiner; Kim, Hyeong; Glover, Mark; Tolinger, Martin

Citation:

Citation: Eidelpes, Reiner; Kim, Hyeong; Glover, Mark; Tolinger, Martin. "NMR resonance assignments of the FinO-domain of the RNA chaperone RocC." Biomol. NMR Assign. 15, 61-64 (2021).
PubMed: 33179208

Assembly members:

Assembly members:
entity_1, polymer, 230 residues, 25773.65 Da.

Natural source:

Natural source: Common Name: Legionella pneumophila Taxonomy ID: 446 Superkingdom: Bacteria Kingdom: not available Genus/species: Legionella pneumophila

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX-6P1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MRKQALHPRTAVINKAQKNQ SKRARSDALLWLAANFPEAF DNSLRIRPLKIGIMSDILQH AEKAEQVGVSKSKLREAVVL FTRRLDYLACLKAREVRIDL HGNPVAEVTEEEAENASMKI KKRVEKSVKNARKQVNAKAA NHSYVNNQPSTVSSVKPMNS FDSHPEPLLPIYPLRSSTYA SQNVAMQSAKSPSVVVKHKA PKQYDPDAVARLKEKLGLSR KAEDKKETTE

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	408
15N chemical shifts	98
1H chemical shifts	615

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Repressor of Competence RocC	1

Entities:

Entity 1, Repressor of Competence RocC 230 residues - 25773.65 Da.

1	MET	ARG	LYS	GLN	ALA	LEU	HIS	PRO	ARG	THR
2	ALA	VAL	ILE	ASN	LYS	ALA	GLN	LYS	ASN	GLN
3	SER	LYS	ARG	ALA	ARG	SER	ASP	ALA	LEU	LEU
4	TRP	LEU	ALA	ALA	ASN	PHE	PRO	GLU	ALA	PHE
5	ASP	ASN	SER	LEU	ARG	ILE	ARG	PRO	LEU	LYS
6	ILE	GLY	ILE	MET	SER	ASP	ILE	LEU	GLN	HIS
7	ALA	GLU	LYS	ALA	GLU	GLN	VAL	GLY	VAL	SER
8	LYS	SER	LYS	LEU	ARG	GLU	ALA	VAL	VAL	LEU
9	PHE	THR	ARG	ARG	LEU	ASP	TYR	LEU	ALA	CYS
10	LEU	LYS	ALA	ARG	GLU	VAL	ARG	ILE	ASP	LEU
11	HIS	GLY	ASN	PRO	VAL	ALA	GLU	VAL	THR	GLU
12	GLU	GLU	ALA	GLU	ASN	ALA	SER	MET	LYS	ILE
13	LYS	LYS	ARG	VAL	GLU	LYS	SER	VAL	LYS	ASN
14	ALA	ARG	LYS	GLN	VAL	ASN	ALA	LYS	ALA	ALA
15	ASN	HIS	SER	TYR	VAL	ASN	ASN	GLN	PRO	SER
16	THR	VAL	SER	SER	VAL	LYS	PRO	MET	ASN	SER
17	PHE	ASP	SER	HIS	PRO	GLU	PRO	LEU	LEU	PRO
18	ILE	TYR	PRO	LEU	ARG	SER	SER	THR	TYR	ALA
19	SER	GLN	ASN	VAL	ALA	MET	GLN	SER	ALA	LYS
20	SER	PRO	SER	VAL	VAL	VAL	LYS	HIS	LYS	ALA
21	PRO	LYS	GLN	TYR	ASP	PRO	ASP	ALA	VAL	ALA
22	ARG	LEU	LYS	GLU	LYS	LEU	GLY	LEU	SER	ARG
23	LYS	ALA	GLU	ASP	LYS	LYS	GLU	THR	THR	GLU

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH-TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 50404

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	MET	ARG	LYS	GLN	ALA	LEU	HIS	PRO	ARG	THR
2	ALA	VAL	ILE	ASN	LYS	ALA	GLN	LYS	ASN	GLN
3	SER	LYS	ARG	ALA	ARG	SER	ASP	ALA	LEU	LEU
4	TRP	LEU	ALA	ALA	ASN	PHE	PRO	GLU	ALA	PHE
5	ASP	ASN	SER	LEU	ARG	ILE	ARG	PRO	LEU	LYS
6	ILE	GLY	ILE	MET	SER	ASP	ILE	LEU	GLN	HIS
7	ALA	GLU	LYS	ALA	GLU	GLN	VAL	GLY	VAL	SER
8	LYS	SER	LYS	LEU	ARG	GLU	ALA	VAL	VAL	LEU
9	PHE	THR	ARG	ARG	LEU	ASP	TYR	LEU	ALA	CYS
10	LEU	LYS	ALA	ARG	GLU	VAL	ARG	ILE	ASP	LEU
11	HIS	GLY	ASN	PRO	VAL	ALA	GLU	VAL	THR	GLU
12	GLU	GLU	ALA	GLU	ASN	ALA	SER	MET	LYS	ILE
13	LYS	LYS	ARG	VAL	GLU	LYS	SER	VAL	LYS	ASN
14	ALA	ARG	LYS	GLN	VAL	ASN	ALA	LYS	ALA	ALA
15	ASN	HIS	SER	TYR	VAL	ASN	ASN	GLN	PRO	SER
16	THR	VAL	SER	SER	VAL	LYS	PRO	MET	ASN	SER
17	PHE	ASP	SER	HIS	PRO	GLU	PRO	LEU	LEU	PRO
18	ILE	TYR	PRO	LEU	ARG	SER	SER	THR	TYR	ALA
19	SER	GLN	ASN	VAL	ALA	MET	GLN	SER	ALA	LYS
20	SER	PRO	SER	VAL	VAL	VAL	LYS	HIS	LYS	ALA
21	PRO	LYS	GLN	TYR	ASP	PRO	ASP	ALA	VAL	ALA
22	ARG	LEU	LYS	GLU	LYS	LEU	GLY	LEU	SER	ARG
23	LYS	ALA	GLU	ASP	LYS	LYS	GLU	THR	THR	GLU

1	MET	ARG	LYS	GLN	ALA	LEU	HIS	PRO	ARG	THR
2	ALA	VAL	ILE	ASN	LYS	ALA	GLN	LYS	ASN	GLN
3	SER	LYS	ARG	ALA	ARG	SER	ASP	ALA	LEU	LEU
4	TRP	LEU	ALA	ALA	ASN	PHE	PRO	GLU	ALA	PHE
5	ASP	ASN	SER	LEU	ARG	ILE	ARG	PRO	LEU	LYS
6	ILE	GLY	ILE	MET	SER	ASP	ILE	LEU	GLN	HIS
7	ALA	GLU	LYS	ALA	GLU	GLN	VAL	GLY	VAL	SER
8	LYS	SER	LYS	LEU	ARG	GLU	ALA	VAL	VAL	LEU
9	PHE	THR	ARG	ARG	LEU	ASP	TYR	LEU	ALA	CYS
10	LEU	LYS	ALA	ARG	GLU	VAL	ARG	ILE	ASP	LEU
11	HIS	GLY	ASN	PRO	VAL	ALA	GLU	VAL	THR	GLU
12	GLU	GLU	ALA	GLU	ASN	ALA	SER	MET	LYS	ILE
13	LYS	LYS	ARG	VAL	GLU	LYS	SER	VAL	LYS	ASN
14	ALA	ARG	LYS	GLN	VAL	ASN	ALA	LYS	ALA	ALA
15	ASN	HIS	SER	TYR	VAL	ASN	ASN	GLN	PRO	SER
16	THR	VAL	SER	SER	VAL	LYS	PRO	MET	ASN	SER
17	PHE	ASP	SER	HIS	PRO	GLU	PRO	LEU	LEU	PRO
18	ILE	TYR	PRO	LEU	ARG	SER	SER	THR	TYR	ALA
19	SER	GLN	ASN	VAL	ALA	MET	GLN	SER	ALA	LYS
20	SER	PRO	SER	VAL	VAL	VAL	LYS	HIS	LYS	ALA
21	PRO	LYS	GLN	TYR	ASP	PRO	ASP	ALA	VAL	ALA
22	ARG	LEU	LYS	GLU	LYS	LEU	GLY	LEU	SER	ARG
23	LYS	ALA	GLU	ASP	LYS	LYS	GLU	THR	THR	GLU

1	MET	ARG	LYS	GLN	ALA	LEU	HIS	PRO	ARG	THR
2	ALA	VAL	ILE	ASN	LYS	ALA	GLN	LYS	ASN	GLN
3	SER	LYS	ARG	ALA	ARG	SER	ASP	ALA	LEU	LEU
4	TRP	LEU	ALA	ALA	ASN	PHE	PRO	GLU	ALA	PHE
5	ASP	ASN	SER	LEU	ARG	ILE	ARG	PRO	LEU	LYS
6	ILE	GLY	ILE	MET	SER	ASP	ILE	LEU	GLN	HIS
7	ALA	GLU	LYS	ALA	GLU	GLN	VAL	GLY	VAL	SER
8	LYS	SER	LYS	LEU	ARG	GLU	ALA	VAL	VAL	LEU
9	PHE	THR	ARG	ARG	LEU	ASP	TYR	LEU	ALA	CYS
10	LEU	LYS	ALA	ARG	GLU	VAL	ARG	ILE	ASP	LEU
11	HIS	GLY	ASN	PRO	VAL	ALA	GLU	VAL	THR	GLU
12	GLU	GLU	ALA	GLU	ASN	ALA	SER	MET	LYS	ILE
13	LYS	LYS	ARG	VAL	GLU	LYS	SER	VAL	LYS	ASN
14	ALA	ARG	LYS	GLN	VAL	ASN	ALA	LYS	ALA	ALA
15	ASN	HIS	SER	TYR	VAL	ASN	ASN	GLN	PRO	SER
16	THR	VAL	SER	SER	VAL	LYS	PRO	MET	ASN	SER
17	PHE	ASP	SER	HIS	PRO	GLU	PRO	LEU	LEU	PRO
18	ILE	TYR	PRO	LEU	ARG	SER	SER	THR	TYR	ALA
19	SER	GLN	ASN	VAL	ALA	MET	GLN	SER	ALA	LYS
20	SER	PRO	SER	VAL	VAL	VAL	LYS	HIS	LYS	ALA
21	PRO	LYS	GLN	TYR	ASP	PRO	ASP	ALA	VAL	ALA
22	ARG	LEU	LYS	GLU	LYS	LEU	GLY	LEU	SER	ARG
23	LYS	ALA	GLU	ASP	LYS	LYS	GLU	THR	THR	GLU