BMRB Entry 50698

Name: Domains 5 of the gelation factor from Dictyostelium discoideum
Published: 2021-05-18

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50698

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Domains 5 of the gelation factor from Dictyostelium discoideum

Deposition date:

2021-01-07

Original release date:

2021-05-18

Authors:

Tzeng, Shiou-Ru

Citation:

Citation: Tzeng, Shiou-Ru; Tseng, Yin-Chu; Lin, Chien-Chu; Hsu, Chia-Ying; Huang, Shing-Jong; Kuo, Yi-Ting; Chang, Chung-I. "Molecular insights into substrate recognition and discrimination by the N-terminal domain of Lon AAA+ protease" elife 10, e64056-e64056 (2021).
PubMed: 33929321

Assembly members:

Assembly members:
entity_1, polymer, 110 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Dictyostelium discoideum Taxonomy ID: 44689 Superkingdom: Eukaryota Kingdom: not available Genus/species: Dictyostelium discoideum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-Ig2D5

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GHMTVKPAPSAEHSYAEGEG LVKVFDNAPAEFTIFAVDTK GVARTDGGDPFEVAINGPDG LVVDAKVTDNNDGTYGVVYD APVEGNYNVNVTLRGNPIKN MPIDVKCIEG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	181
15N chemical shifts	97
1H chemical shifts	97

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ig2D5	1

Entities:

Entity 1, Ig2D5 110 residues - Formula weight is not available

1	GLY	HIS	MET	THR	VAL	LYS	PRO	ALA	PRO	SER
2	ALA	GLU	HIS	SER	TYR	ALA	GLU	GLY	GLU	GLY
3	LEU	VAL	LYS	VAL	PHE	ASP	ASN	ALA	PRO	ALA
4	GLU	PHE	THR	ILE	PHE	ALA	VAL	ASP	THR	LYS
5	GLY	VAL	ALA	ARG	THR	ASP	GLY	GLY	ASP	PRO
6	PHE	GLU	VAL	ALA	ILE	ASN	GLY	PRO	ASP	GLY
7	LEU	VAL	VAL	ASP	ALA	LYS	VAL	THR	ASP	ASN
8	ASN	ASP	GLY	THR	TYR	GLY	VAL	VAL	TYR	ASP
9	ALA	PRO	VAL	GLU	GLY	ASN	TYR	ASN	VAL	ASN
10	VAL	THR	LEU	ARG	GLY	ASN	PRO	ILE	LYS	ASN
11	MET	PRO	ILE	ASP	VAL	LYS	CYS	ILE	GLU	GLY

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 50698

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	GLY	HIS	MET	THR	VAL	LYS	PRO	ALA	PRO	SER
2	ALA	GLU	HIS	SER	TYR	ALA	GLU	GLY	GLU	GLY
3	LEU	VAL	LYS	VAL	PHE	ASP	ASN	ALA	PRO	ALA
4	GLU	PHE	THR	ILE	PHE	ALA	VAL	ASP	THR	LYS
5	GLY	VAL	ALA	ARG	THR	ASP	GLY	GLY	ASP	PRO
6	PHE	GLU	VAL	ALA	ILE	ASN	GLY	PRO	ASP	GLY
7	LEU	VAL	VAL	ASP	ALA	LYS	VAL	THR	ASP	ASN
8	ASN	ASP	GLY	THR	TYR	GLY	VAL	VAL	TYR	ASP
9	ALA	PRO	VAL	GLU	GLY	ASN	TYR	ASN	VAL	ASN
10	VAL	THR	LEU	ARG	GLY	ASN	PRO	ILE	LYS	ASN
11	MET	PRO	ILE	ASP	VAL	LYS	CYS	ILE	GLU	GLY

1	GLY	HIS	MET	THR	VAL	LYS	PRO	ALA	PRO	SER
2	ALA	GLU	HIS	SER	TYR	ALA	GLU	GLY	GLU	GLY
3	LEU	VAL	LYS	VAL	PHE	ASP	ASN	ALA	PRO	ALA
4	GLU	PHE	THR	ILE	PHE	ALA	VAL	ASP	THR	LYS
5	GLY	VAL	ALA	ARG	THR	ASP	GLY	GLY	ASP	PRO
6	PHE	GLU	VAL	ALA	ILE	ASN	GLY	PRO	ASP	GLY
7	LEU	VAL	VAL	ASP	ALA	LYS	VAL	THR	ASP	ASN
8	ASN	ASP	GLY	THR	TYR	GLY	VAL	VAL	TYR	ASP
9	ALA	PRO	VAL	GLU	GLY	ASN	TYR	ASN	VAL	ASN
10	VAL	THR	LEU	ARG	GLY	ASN	PRO	ILE	LYS	ASN
11	MET	PRO	ILE	ASP	VAL	LYS	CYS	ILE	GLU	GLY

1	GLY	HIS	MET	THR	VAL	LYS	PRO	ALA	PRO	SER
2	ALA	GLU	HIS	SER	TYR	ALA	GLU	GLY	GLU	GLY
3	LEU	VAL	LYS	VAL	PHE	ASP	ASN	ALA	PRO	ALA
4	GLU	PHE	THR	ILE	PHE	ALA	VAL	ASP	THR	LYS
5	GLY	VAL	ALA	ARG	THR	ASP	GLY	GLY	ASP	PRO
6	PHE	GLU	VAL	ALA	ILE	ASN	GLY	PRO	ASP	GLY
7	LEU	VAL	VAL	ASP	ALA	LYS	VAL	THR	ASP	ASN
8	ASN	ASP	GLY	THR	TYR	GLY	VAL	VAL	TYR	ASP
9	ALA	PRO	VAL	GLU	GLY	ASN	TYR	ASN	VAL	ASN
10	VAL	THR	LEU	ARG	GLY	ASN	PRO	ILE	LYS	ASN
11	MET	PRO	ILE	ASP	VAL	LYS	CYS	ILE	GLU	GLY