BMRB Entry 50821

Title:
1H, 15N, 13C, backbone resonance assignment of the Zn/aKG bound human Alkbh5, pH 6.0
Deposition date:
2021-03-11
Original release date:
2021-04-01
Authors:
Purslow, Jeffrey; Venditti, Vincenzo
Citation:

Citation: Purslow, Jeffrey; Nguyen, Trang; Khatiwada, Balabhadra; Singh, Aayushi; Venditti, Vincenzo. "N 6-methyladenosine binding induces a metal-centered rearrangement that activates the human RNA demethylase Alkbh5"  Sci. Adv. 7, eabi8215-eabi8215 (2021).
PubMed: 34407931

Assembly members:

Assembly members:
entity_1, polymer, 230 residues, Formula weight is not available
entity_ZN, non-polymer, 65.409 Da.
entity_AKG, non-polymer, 146.098 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: Modified pET21a

Data sets:
Data typeCount
13C chemical shifts624
15N chemical shifts196
1H chemical shifts196

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Alkbh5 66-292, chain 11
2Alkbh5 66-292, chain 21
3ZN ion2
4AKG3

Entities:

Entity 1, Alkbh5 66-292, chain 1 230 residues - Formula weight is not available

1   SERHISMETPROGLUARGSERASPTYRGLU
2   GLUGLNGLNLEUGLNLYSGLUGLUGLUALA
3   ARGLYSVALLYSSERGLYILEARGGLNMET
4   ARGLEUPHESERGLNASPGLUCYSALALYS
5   ILEGLUALAARGILEASPGLUVALVALSER
6   ARGALAGLULYSGLYLEUTYRASNGLUHIS
7   THRVALASPARGALAPROLEUARGASNLYS
8   TYRPHEPHEGLYGLUGLYTYRTHRTYRGLY
9   ALAGLNLEUGLNLYSARGGLYPROGLYGLN
10   GLUARGLEUTYRPROPROGLYASPVALASP
11   GLUILEPROGLUTRPVALHISGLNLEUVAL
12   ILEGLNLYSLEUVALGLUHISARGVALILE
13   PROGLUGLYPHEVALASNSERALAVALILE
14   ASNASPTYRGLNPROGLYGLYCYSILEVAL
15   SERHISVALASPPROILEHISILEPHEGLU
16   ARGPROILEVALSERVALSERPHEPHESER
17   ASPSERALALEUCYSPHEGLYCYSLYSPHE
18   GLNPHELYSPROILEARGVALSERGLUPRO
19   VALLEUSERLEUPROVALARGARGGLYSER
20   VALTHRVALLEUSERGLYTYRALAALAASP
21   GLUILETHRHISCYSILEARGPROGLNASP
22   ILELYSGLUARGARGALAVALILEILELEU
23   ARGLYSTHRARGLEUASPALAPROARGLEU

Entity 2, ZN ion - Zn - 65.409 Da.

1   ZN

Entity 3, AKG - C5 H6 O5 - 146.098 Da.

1   AKG

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks