BMRB Entry 51324

Name: NMR Parameters of the Reduced, Unfolded Short Isoform of Hypogastrura harveyi &quot;snow flea&quot; Antifreeze Protein
Published: 2022-11-04

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51324

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Parameters of the Reduced, Unfolded Short Isoform of Hypogastrura harveyi "snow flea" Antifreeze Protein

Deposition date:

2022-02-11

Original release date:

2022-11-04

Authors:

Trevino, Miguel; Pantoja-Uceda, David; Mompean, Miguel; Laurents, Douglas

Citation:

Citation: Trevino, Miguel; Redondo Moya, Maria; Lopez Sanchez, Ruben; Pantoja-Uceda, David; Mompean, Miguel; Laurents, Douglas. "Insight into polyproline II helical bundle stability in an antifreeze protein denatured state" Biophys. J. 121, 4560-4568 (2022).
PubMed: 36815707

Assembly members:

Assembly members:
entity_1, polymer, 81 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Hypogastrura harveyi Taxonomy ID: 351090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Hypogastrura harveyi

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET45b+

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: CKGADGAHGVNGCPGTAGAA GSVGGPGCDGGHGGNGGNGN PGCAGGVGGAGGASGGTGVG GRGGKGGSGTPKGADGAPGA P

Data sets:

assigned_chemical_shifts

Data type	Count
13C chemical shifts	381
15N chemical shifts	222
1H chemical shifts	210

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Hypogastrura harveyi 6.5 kDa glycine-rich antifreeze protein	1

Entities:

Entity 1, Hypogastrura harveyi 6.5 kDa glycine-rich antifreeze protein 81 residues - Formula weight is not available

1

CYS

LYS

GLY

ALA

ASP

GLY

ALA

HIS

GLY

VAL

2

ASN

GLY

CYS

PRO

GLY

THR

ALA

GLY

ALA

3

GLY

SER

VAL

GLY

PRO

GLY

CYS

ASP

GLY

4

GLY

HIS

GLY

ASN

GLY

ASN

GLY

ASN

5

PRO

GLY

CYS

ALA

GLY

VAL

GLY

ALA

6

GLY

ALA

SER

GLY

THR

GLY

VAL

GLY

7

GLY

ARG

GLY

LYS

GLY

SER

GLY

THR

8

PRO

LYS

GLY

ALA

ASP

GLY

ALA

PRO

GLY

ALA

9

PRO

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_2
3D HNCA	sample_1	isotropic	sample_conditions_2
3D HNCO	sample_1	isotropic	sample_conditions_2
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_2
T1/R1 relaxation	sample_1	isotropic	sample_conditions_2
T1rho/R1rho relaxation	sample_1	isotropic	sample_conditions_2
1H-15N heteronoe	sample_1	isotropic	sample_conditions_2
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_3
T1/R1 relaxation	sample_1	isotropic	sample_conditions_3
T1rho/R1rho relaxation	sample_1	isotropic	sample_conditions_3
1H-15N heteronoe	sample_1	isotropic	sample_conditions_3
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1

Uniprot	Q38PT6 (Q38PT6_9HEXA)
AlphaFold	Q38PT6

BMRB Entry 51324

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: