BMRB Entry 51340

Name: Backbone and side chain solution NMR assignment of truncated form of small hepatitis D virus antigen Delta60-S-HDAg
Published: 2022-06-20

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51340

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: Backbone and side chain solution NMR assignment of truncated form of small hepatitis D virus antigen Delta60-S-HDAg PubMed: 35749039

Deposition date: 2022-02-28 Original release date: 2022-06-20

Authors: Yang, Yang; Bockmann, Anja; Lecoq, Lauriane

Citation: Yang, Yang; Delcourte, Loic; Fogeron, Marie-Laure; Bockmann, Anja; Lecoq, Lauriane. "1H, 15N and 13C backbone and side chain solution NMR assignments of the truncated small hepatitis delta antigen Delta60-S-HDAg" Biomol. NMR Assign. 16, 311-316 (2022).

Assembly members:
entity_1, polymer, 140 residues, 15120 Da.

Natural source: Common Name: Hepatitis delta virus Taxonomy ID: 12475 Superkingdom: Viruses Kingdom: not available Genus/species: Deltavirus Hepatitis D virus

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX-6P-1-GST

Entity Sequences (FASTA):
entity_1: GPLGSKDKDGEGAPPAKRAR TDQMEVDSGPGKRPLRGGFT DKERQDHRRRKALENKKKQL SAGGKNLSKEEEEELRRLTE EDERRERRVAGPPVGGVNPL EGGSRGAPGGGFVPNLQGVP ESPFSRTGEGLDIRGNQGFP

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	544
15N chemical shifts	136
1H chemical shifts	811

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	delta60_SHDAg	1

Entities:

Entity 1, delta60_SHDAg 140 residues - 15120 Da.

The first 5 residues (GPLGS) are from GST-cleavage

1	GLY	PRO	LEU	GLY	SER	LYS	ASP	LYS	ASP	GLY
2	GLU	GLY	ALA	PRO	PRO	ALA	LYS	ARG	ALA	ARG
3	THR	ASP	GLN	MET	GLU	VAL	ASP	SER	GLY	PRO
4	GLY	LYS	ARG	PRO	LEU	ARG	GLY	GLY	PHE	THR
5	ASP	LYS	GLU	ARG	GLN	ASP	HIS	ARG	ARG	ARG
6	LYS	ALA	LEU	GLU	ASN	LYS	LYS	LYS	GLN	LEU
7	SER	ALA	GLY	GLY	LYS	ASN	LEU	SER	LYS	GLU
8	GLU	GLU	GLU	GLU	LEU	ARG	ARG	LEU	THR	GLU
9	GLU	ASP	GLU	ARG	ARG	GLU	ARG	ARG	VAL	ALA
10	GLY	PRO	PRO	VAL	GLY	GLY	VAL	ASN	PRO	LEU
11	GLU	GLY	GLY	SER	ARG	GLY	ALA	PRO	GLY	GLY
12	GLY	PHE	VAL	PRO	ASN	LEU	GLN	GLY	VAL	PRO
13	GLU	SER	PRO	PHE	SER	ARG	THR	GLY	GLU	GLY
14	LEU	ASP	ILE	ARG	GLY	ASN	GLN	GLY	PHE	PRO

Samples:

sample_1: delta60_SHDAg, [U-99% 13C; U-99% 15N], 200 uM; phosphate buffer 50 mM; NaCl 50 mM

sample_2: delta60_SHDAg, [U-99% 13C; U-99% 15N], 200 uM; phosphate buffer 50 mM; NaCl 50 mM

sample_conditions_1: ionic strength: 50 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACO	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D (H)CCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1

Software:

TOPSPIN v4.0.5 - collection, processing

CcpNMR v2.5 - chemical shift assignment, data analysis, peak picking

ARIA2 - refinement, structure solution

NMR spectrometers:

Bruker AVANCE III 600 MHz
Bruker AVANCE III 950 MHz

Biological Magnetic Resonance Data Bank