BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 51348

Title: NPSL2_Frag1

Deposition date: 2022-03-07 Original release date: 2022-03-31

Authors: Liu, Yaping; Keane, Sarah

Citation: Liu, Yaping; Munsayac, Aldrex; Hall, Ian; Keane, Sarah. "Solution structure of NPSL2, a regulatory element in the oncomiR-1 RNA"  J. Mol. Biol. ., .-..

Assembly members:
entity_1, polymer, 24 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: In vitro transcription   Host organism: In vitro

Entity Sequences (FASTA):
entity_1: GGGUGUAGAAGAGAUUCUAC ACCC

Data sets:
Data typeCount
13C chemical shifts31
1H chemical shifts221

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1NPSL2_Frag11

Entities:

Entity 1, NPSL2_Frag1 24 residues - Formula weight is not available

1   GGGUGUAGAA
2   GAGAUUCUAC
3   ACCC

Samples:

sample_1: NPSL2_Frag1 500 uM; potassium phosphate 50 mM

sample_conditions_1: ionic strength: 0.05 M; pH: 7.5; pressure: 1 atm; temperature: 298 K

sample_conditions_2: ionic strength: 0.05 M; pH: 7.5; pressure: 1 atm; temperature: 288 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C HMQCsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_2

Software:

TOPSPIN - collection

NMRFx Analyst - processing

NMRViewJ - chemical shift assignment

NMRPipe - processing

NMR spectrometers:

  • Bruker AVANCE NEO 600 MHz