BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 51663

Title: Backbone resonance assignments for a 21-residue peptide corresponding to the SARS-CoV-2 spike C-terminal tail   PubMed: 38102143

Deposition date: 2022-10-14 Original release date: 2023-12-19

Authors: He, Yanan; Chen, Yihong; Dey, Debajit; Hasan, Saif; Orban, John

Citation: Dey, Debajit; Qing, Enya; Chen, Yihong; He, Yanan; Jennings, Benjamin; Cohn, Whitaker; Singh, Suruchi; Gakhar, Lokesh; Schnicker, Nicholas; Pierce, Brian; Whitelegge, Julian; Doray, Balraj; Orban, John; Gallagher, Tom; Hasan, Saif. "A single C-terminal residue controls SARS-CoV-2 spike trafficking and incorporation into VLPs"  Nat. Commun. 14, 8358-8358 (2023).

Assembly members:
entity_1, polymer, 21 residues, Formula weight is not available

Natural source:   Common Name: SARS-CoV-2   Taxonomy ID: 2697049   Superkingdom: Viruses   Kingdom: not available   Genus/species: Betacoronavirus HCoV-SARS

Experimental source:   Production method: bacterial expression   Host organism: E. coli BL21(DE3)

Entity Sequences (FASTA):
entity_1: CCKFDEDDSEPVLKGVKLHY T

Data sets:
Data typeCount
13C chemical shifts57
15N chemical shifts19
1H chemical shifts19

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1cov21

Entities:

Entity 1, cov2 21 residues - Formula weight is not available

1   CYSCYSLYSPHEASPGLUASPASPSERGLU
2   PROVALLEULYSGLYVALLYSLEUHISTYR
3   THR

Samples:

sample_1: 21-residue peptide corresponding to the SARS-CoV-2 spike C-terminal tail, [U-100% 13C 15N], 300 uM; potassium phosphate 100 mM; DTT 1 mM

sample_conditions_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCACONHsample_1isotropicsample_conditions_1
HNCOsample_1isotropicsample_conditions_1

Software:

TOPSPIN - data collection

NMRPipe - data processiing

NMRFAM-SPARKY - chemical shift assignment

NMR spectrometers:

  • Bruker Avance 900 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts