BMRB Entry 52144

Name: Backbone 1H, 13C and 15N Chemical Shift Assignment of Mouse Siderocalin (Lipocalin 2)
Published: 2024-06-24

BMRB Entry DOI: doi:10.13018/BMR52144

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C and 15N Chemical Shift Assignment of Mouse Siderocalin (Lipocalin 2)

Deposition date:

2023-09-20

Original release date:

2024-06-24

Authors:

Moeller, Johanna; Bozhanova, Nina; Voehler, Markus; Meiler, Jens; Schoeder, Clara

Citation:

Citation: Moeller, Johanna; Bozhanova, Nina; Voehler, Markus; Meiler, Jens; Schoeder, Clara. "Backbone chemical shift and secondary structure assignments for mouse siderocalin" Biomol. NMR Assign. 18, 79-84 (2024).
PubMed: 38564159

Assembly members:

Assembly members:
entity_1, polymer, 180 residues, 20874 Da.

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET21a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: QDSTQNLIPAPSLLTVPLQP DFRSDQFRGRWYVVGLAGNA VQKKTEGSFTMYSTIYELQE NNSYNVTSILVRDQDQGCRY WIRTFVPSSRAGQFTLGNMH RYPQVQSYNVQVATTDYNQF AMVFFRKTSENKQYFKITLY GRTKELSPELKERFTRFAKS LGLKDDNIIFSVPTDQCIDN

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list

Data type	Count
13C chemical shifts	280
15N chemical shifts	150
1H chemical shifts	150

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	siderocalin	1

Entities:

Entity 1, siderocalin 180 residues - 20874 Da.

1	GLN	ASP	SER	THR	GLN	ASN	LEU	ILE	PRO	ALA
2	PRO	SER	LEU	LEU	THR	VAL	PRO	LEU	GLN	PRO
3	ASP	PHE	ARG	SER	ASP	GLN	PHE	ARG	GLY	ARG
4	TRP	TYR	VAL	VAL	GLY	LEU	ALA	GLY	ASN	ALA
5	VAL	GLN	LYS	LYS	THR	GLU	GLY	SER	PHE	THR
6	MET	TYR	SER	THR	ILE	TYR	GLU	LEU	GLN	GLU
7	ASN	ASN	SER	TYR	ASN	VAL	THR	SER	ILE	LEU
8	VAL	ARG	ASP	GLN	ASP	GLN	GLY	CYS	ARG	TYR
9	TRP	ILE	ARG	THR	PHE	VAL	PRO	SER	SER	ARG
10	ALA	GLY	GLN	PHE	THR	LEU	GLY	ASN	MET	HIS
11	ARG	TYR	PRO	GLN	VAL	GLN	SER	TYR	ASN	VAL
12	GLN	VAL	ALA	THR	THR	ASP	TYR	ASN	GLN	PHE
13	ALA	MET	VAL	PHE	PHE	ARG	LYS	THR	SER	GLU
14	ASN	LYS	GLN	TYR	PHE	LYS	ILE	THR	LEU	TYR
15	GLY	ARG	THR	LYS	GLU	LEU	SER	PRO	GLU	LEU
16	LYS	GLU	ARG	PHE	THR	ARG	PHE	ALA	LYS	SER
17	LEU	GLY	LEU	LYS	ASP	ASP	ASN	ILE	ILE	PHE
18	SER	VAL	PRO	THR	ASP	GLN	CYS	ILE	ASP	ASN

Name	Sample	Sample state	Sample conditions
1D 1H	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D CBCANH	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1

BMRB Entry 52144

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLN	ASP	SER	THR	GLN	ASN	LEU	ILE	PRO	ALA
2	PRO	SER	LEU	LEU	THR	VAL	PRO	LEU	GLN	PRO
3	ASP	PHE	ARG	SER	ASP	GLN	PHE	ARG	GLY	ARG
4	TRP	TYR	VAL	VAL	GLY	LEU	ALA	GLY	ASN	ALA
5	VAL	GLN	LYS	LYS	THR	GLU	GLY	SER	PHE	THR
6	MET	TYR	SER	THR	ILE	TYR	GLU	LEU	GLN	GLU
7	ASN	ASN	SER	TYR	ASN	VAL	THR	SER	ILE	LEU
8	VAL	ARG	ASP	GLN	ASP	GLN	GLY	CYS	ARG	TYR
9	TRP	ILE	ARG	THR	PHE	VAL	PRO	SER	SER	ARG
10	ALA	GLY	GLN	PHE	THR	LEU	GLY	ASN	MET	HIS
11	ARG	TYR	PRO	GLN	VAL	GLN	SER	TYR	ASN	VAL
12	GLN	VAL	ALA	THR	THR	ASP	TYR	ASN	GLN	PHE
13	ALA	MET	VAL	PHE	PHE	ARG	LYS	THR	SER	GLU
14	ASN	LYS	GLN	TYR	PHE	LYS	ILE	THR	LEU	TYR
15	GLY	ARG	THR	LYS	GLU	LEU	SER	PRO	GLU	LEU
16	LYS	GLU	ARG	PHE	THR	ARG	PHE	ALA	LYS	SER
17	LEU	GLY	LEU	LYS	ASP	ASP	ASN	ILE	ILE	PHE
18	SER	VAL	PRO	THR	ASP	GLN	CYS	ILE	ASP	ASN

1	GLN	ASP	SER	THR	GLN	ASN	LEU	ILE	PRO	ALA
2	PRO	SER	LEU	LEU	THR	VAL	PRO	LEU	GLN	PRO
3	ASP	PHE	ARG	SER	ASP	GLN	PHE	ARG	GLY	ARG
4	TRP	TYR	VAL	VAL	GLY	LEU	ALA	GLY	ASN	ALA
5	VAL	GLN	LYS	LYS	THR	GLU	GLY	SER	PHE	THR
6	MET	TYR	SER	THR	ILE	TYR	GLU	LEU	GLN	GLU
7	ASN	ASN	SER	TYR	ASN	VAL	THR	SER	ILE	LEU
8	VAL	ARG	ASP	GLN	ASP	GLN	GLY	CYS	ARG	TYR
9	TRP	ILE	ARG	THR	PHE	VAL	PRO	SER	SER	ARG
10	ALA	GLY	GLN	PHE	THR	LEU	GLY	ASN	MET	HIS
11	ARG	TYR	PRO	GLN	VAL	GLN	SER	TYR	ASN	VAL
12	GLN	VAL	ALA	THR	THR	ASP	TYR	ASN	GLN	PHE
13	ALA	MET	VAL	PHE	PHE	ARG	LYS	THR	SER	GLU
14	ASN	LYS	GLN	TYR	PHE	LYS	ILE	THR	LEU	TYR
15	GLY	ARG	THR	LYS	GLU	LEU	SER	PRO	GLU	LEU
16	LYS	GLU	ARG	PHE	THR	ARG	PHE	ALA	LYS	SER
17	LEU	GLY	LEU	LYS	ASP	ASP	ASN	ILE	ILE	PHE
18	SER	VAL	PRO	THR	ASP	GLN	CYS	ILE	ASP	ASN

1	GLN	ASP	SER	THR	GLN	ASN	LEU	ILE	PRO	ALA
2	PRO	SER	LEU	LEU	THR	VAL	PRO	LEU	GLN	PRO
3	ASP	PHE	ARG	SER	ASP	GLN	PHE	ARG	GLY	ARG
4	TRP	TYR	VAL	VAL	GLY	LEU	ALA	GLY	ASN	ALA
5	VAL	GLN	LYS	LYS	THR	GLU	GLY	SER	PHE	THR
6	MET	TYR	SER	THR	ILE	TYR	GLU	LEU	GLN	GLU
7	ASN	ASN	SER	TYR	ASN	VAL	THR	SER	ILE	LEU
8	VAL	ARG	ASP	GLN	ASP	GLN	GLY	CYS	ARG	TYR
9	TRP	ILE	ARG	THR	PHE	VAL	PRO	SER	SER	ARG
10	ALA	GLY	GLN	PHE	THR	LEU	GLY	ASN	MET	HIS
11	ARG	TYR	PRO	GLN	VAL	GLN	SER	TYR	ASN	VAL
12	GLN	VAL	ALA	THR	THR	ASP	TYR	ASN	GLN	PHE
13	ALA	MET	VAL	PHE	PHE	ARG	LYS	THR	SER	GLU
14	ASN	LYS	GLN	TYR	PHE	LYS	ILE	THR	LEU	TYR
15	GLY	ARG	THR	LYS	GLU	LEU	SER	PRO	GLU	LEU
16	LYS	GLU	ARG	PHE	THR	ARG	PHE	ALA	LYS	SER
17	LEU	GLY	LEU	LYS	ASP	ASP	ASN	ILE	ILE	PHE
18	SER	VAL	PRO	THR	ASP	GLN	CYS	ILE	ASP	ASN