BMRB Entry 52187

Name: aMED25-ACID(551-680)
Published: 2024-01-09

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52187

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

aMED25-ACID(551-680)

Deposition date:

2023-10-22

Original release date:

2024-01-09

Authors:

Xiong, Yue; Zhu, Jiang; Yang, Yunhuang

Citation:

Citation: Xiong, Yue; Zhu, Jiang; Hu, Rui; Li, Ying; Yang, Yunhuang; Liu, Maili. "Chemical shift assignments of the ACID domain of MED25, a subunit of the mediator complex in Arabidopsis thaliana" Biomol. NMR Assign. 18, 27-31 (2024).
PubMed: 38334938

Assembly members:

Assembly members:
entity_1, polymer, 130 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: recombinant technology Host organism: E. coli - cell free Vector: pET32

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: SQSKYVKVWEGNLSGQRQGQ PVLITRLEGYRSASASDSLA ANWPPTMQIVRLISQDHMNN KQYVGKADFLVFRAMSQHGF LGQLQDKKLCAVIQLPSQTL LLSVSDKACRLIGMLFPGDM VVFKPQIPNQ

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	544
15N chemical shifts	142
1H chemical shifts	878

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	aMED25-ACID	1

Entities:

Entity 1, aMED25-ACID 130 residues - Formula weight is not available

1	SER	GLN	SER	LYS	TYR	VAL	LYS	VAL	TRP	GLU
2	GLY	ASN	LEU	SER	GLY	GLN	ARG	GLN	GLY	GLN
3	PRO	VAL	LEU	ILE	THR	ARG	LEU	GLU	GLY	TYR
4	ARG	SER	ALA	SER	ALA	SER	ASP	SER	LEU	ALA
5	ALA	ASN	TRP	PRO	PRO	THR	MET	GLN	ILE	VAL
6	ARG	LEU	ILE	SER	GLN	ASP	HIS	MET	ASN	ASN
7	LYS	GLN	TYR	VAL	GLY	LYS	ALA	ASP	PHE	LEU
8	VAL	PHE	ARG	ALA	MET	SER	GLN	HIS	GLY	PHE
9	LEU	GLY	GLN	LEU	GLN	ASP	LYS	LYS	LEU	CYS
10	ALA	VAL	ILE	GLN	LEU	PRO	SER	GLN	THR	LEU
11	LEU	LEU	SER	VAL	SER	ASP	LYS	ALA	CYS	ARG
12	LEU	ILE	GLY	MET	LEU	PHE	PRO	GLY	ASP	MET
13	VAL	VAL	PHE	LYS	PRO	GLN	ILE	PRO	ASN	GLN

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HBHANH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D (H)CCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 52187

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	SER	GLN	SER	LYS	TYR	VAL	LYS	VAL	TRP	GLU
2	GLY	ASN	LEU	SER	GLY	GLN	ARG	GLN	GLY	GLN
3	PRO	VAL	LEU	ILE	THR	ARG	LEU	GLU	GLY	TYR
4	ARG	SER	ALA	SER	ALA	SER	ASP	SER	LEU	ALA
5	ALA	ASN	TRP	PRO	PRO	THR	MET	GLN	ILE	VAL
6	ARG	LEU	ILE	SER	GLN	ASP	HIS	MET	ASN	ASN
7	LYS	GLN	TYR	VAL	GLY	LYS	ALA	ASP	PHE	LEU
8	VAL	PHE	ARG	ALA	MET	SER	GLN	HIS	GLY	PHE
9	LEU	GLY	GLN	LEU	GLN	ASP	LYS	LYS	LEU	CYS
10	ALA	VAL	ILE	GLN	LEU	PRO	SER	GLN	THR	LEU
11	LEU	LEU	SER	VAL	SER	ASP	LYS	ALA	CYS	ARG
12	LEU	ILE	GLY	MET	LEU	PHE	PRO	GLY	ASP	MET
13	VAL	VAL	PHE	LYS	PRO	GLN	ILE	PRO	ASN	GLN

1	SER	GLN	SER	LYS	TYR	VAL	LYS	VAL	TRP	GLU
2	GLY	ASN	LEU	SER	GLY	GLN	ARG	GLN	GLY	GLN
3	PRO	VAL	LEU	ILE	THR	ARG	LEU	GLU	GLY	TYR
4	ARG	SER	ALA	SER	ALA	SER	ASP	SER	LEU	ALA
5	ALA	ASN	TRP	PRO	PRO	THR	MET	GLN	ILE	VAL
6	ARG	LEU	ILE	SER	GLN	ASP	HIS	MET	ASN	ASN
7	LYS	GLN	TYR	VAL	GLY	LYS	ALA	ASP	PHE	LEU
8	VAL	PHE	ARG	ALA	MET	SER	GLN	HIS	GLY	PHE
9	LEU	GLY	GLN	LEU	GLN	ASP	LYS	LYS	LEU	CYS
10	ALA	VAL	ILE	GLN	LEU	PRO	SER	GLN	THR	LEU
11	LEU	LEU	SER	VAL	SER	ASP	LYS	ALA	CYS	ARG
12	LEU	ILE	GLY	MET	LEU	PHE	PRO	GLY	ASP	MET
13	VAL	VAL	PHE	LYS	PRO	GLN	ILE	PRO	ASN	GLN

1	SER	GLN	SER	LYS	TYR	VAL	LYS	VAL	TRP	GLU
2	GLY	ASN	LEU	SER	GLY	GLN	ARG	GLN	GLY	GLN
3	PRO	VAL	LEU	ILE	THR	ARG	LEU	GLU	GLY	TYR
4	ARG	SER	ALA	SER	ALA	SER	ASP	SER	LEU	ALA
5	ALA	ASN	TRP	PRO	PRO	THR	MET	GLN	ILE	VAL
6	ARG	LEU	ILE	SER	GLN	ASP	HIS	MET	ASN	ASN
7	LYS	GLN	TYR	VAL	GLY	LYS	ALA	ASP	PHE	LEU
8	VAL	PHE	ARG	ALA	MET	SER	GLN	HIS	GLY	PHE
9	LEU	GLY	GLN	LEU	GLN	ASP	LYS	LYS	LEU	CYS
10	ALA	VAL	ILE	GLN	LEU	PRO	SER	GLN	THR	LEU
11	LEU	LEU	SER	VAL	SER	ASP	LYS	ALA	CYS	ARG
12	LEU	ILE	GLY	MET	LEU	PHE	PRO	GLY	ASP	MET
13	VAL	VAL	PHE	LYS	PRO	GLN	ILE	PRO	ASN	GLN