BMRB Entry 5289
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5289
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Citation: Czajlik, Andras; Mesko, Eszter; Penke, Botond; Perczel, Andras. "Investigation of Penetratin Peptides. Part 1: The Environment Dependent
Conformational Properties of Penetratin and two of its Derivatives" J. Pept. Sci. 8, 151-171 (2002).
PubMed: 11991205
Assembly members:
third helix of Antennapedia homeodomain, polymer, 16 residues, 2246 Da.
Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
third helix of Antennapedia homeodomain: RQIKIWFQNRRMKWKK
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 294 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | third helix of Antennapedia homeodomain | 1 |
Entities:
Entity 1, third helix of Antennapedia homeodomain 16 residues - 2246 Da.
| 1 | ARG | GLN | ILE | LYS | ILE | TRP | PHE | GLN | ASN | ARG | ||||
| 2 | ARG | MET | LYS | TRP | LYS | LYS |
Samples:
sample_1: third helix of Antennapedia homeodomain 1.5 mM; trifluoroethanol 90%; water 10%
sample_2: third helix of Antennapedia homeodomain 1.5 mM; trifluoroethanol 10%; water 90%
cond_set_1: pH: 3; temperature: 300 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H DQF-COSY | not available | not available | not available |
| 2D 1H-1H TOCSY | not available | not available | not available |
| 2D 1H-1H NOESY | not available | not available | not available |
Software:
FELIX v97.2 - peak assignment, peak picking, raw spectral data processing
NMR spectrometers:
- Bruker DRX 500 MHz
Related Database Links:
| BMRB | 1037 4104 5542 |
| PDB | |
| DBJ | BAA01947 BAA04087 BAA13173 BAA76868 BAA76869 |
| EMBL | CAA05151 CAA06713 CAA07498 CAA07499 CAA27417 |
| GB | AAA19914 AAA20072 AAA27723 AAA27728 AAA28373 |
| PIR | I65241 S20087 S57235 S72429 |
| PRF | 1105304A 1202268A 1205216A 1205300A 1301323A |
| REF | NP_001009335 NP_001011405 NP_001011571 NP_001012293 NP_001017480 |
| SP | A1YER7 A1YFA5 A1YFD8 A1YFY3 A2D4P8 |
| TPG | DAA05783 DAA18571 DAA18675 DAA30035 DAA30043 |
| AlphaFold | A1YER7 A1YFA5 A1YFD8 A1YFY3 A2D4P8 |