BMRB Entry 5513

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5513

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignment and secondary structure identification of the ribosomal protein L11 from Thermotoga maritima

Deposition date:

2002-09-09

Original release date:

2006-10-06

Authors:

Ilin, Sergey; Hoskins, Aaron; Schwalbe, Harald; Wohnert, Jens

Citation:

Citation: Ilin, Sergey; Hoskins, Aaron; Schwalbe, Harald; Wohnert, Jens. "Letter to the Editor: NMR assignment of the full-length ribosomal protein L11 from Thermotoga maritima" J. Biomol. NMR 25, 163-164 (2003).

Assembly members:

Assembly members:
Ribosomal protein L11, polymer, 141 residues, 15088 Da.

Natural source:

Natural source: Common Name: Thermotoga maritima Taxonomy ID: 2336 Superkingdom: Eubacteria Kingdom: not available Genus/species: Thermotoga maritima

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET11a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ribosomal protein L11: MAKKVAAQIKLQLPAGKATP APPVGPALGQHGVNIMEFCK RFNAETADKAGMILPVVITV YEDKSFTFIIKTPPASFLLK KAAGIEKGSSEPKRKIVGKV TRKQIEEIAKTKMPDLNANS LEAAMKIIEGTAKSMGIEVV D

Data sets:

assigned_chemical_shifts
- shift_set_1
coupling_constants
- coupling_constants_set_1

Data type	Count
1H chemical shifts	990
13C chemical shifts	604
15N chemical shifts	137
coupling constants	111

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	L11 monomer	1

Entities:

Entity 1, L11 monomer 141 residues - 15088 Da.

1

MET

ALA

LYS

VAL

ALA

GLN

ILE

LYS

2

LEU

GLN

LEU

PRO

ALA

GLY

LYS

ALA

THR

PRO

3

ALA

PRO

VAL

GLY

PRO

ALA

LEU

GLY

GLN

4

HIS

GLY

VAL

ASN

ILE

MET

GLU

PHE

CYS

LYS

5

ARG

PHE

ASN

ALA

GLU

THR

ALA

ASP

LYS

ALA

6

GLY

MET

ILE

LEU

PRO

VAL

ILE

THR

VAL

7

TYR

GLU

ASP

LYS

SER

PHE

THR

PHE

ILE

8

LYS

THR

PRO

ALA

SER

PHE

LEU

LYS

9

LYS

ALA

GLY

ILE

GLU

LYS

GLY

SER

10

GLU

PRO

LYS

ARG

LYS

ILE

VAL

GLY

LYS

VAL

11

THR

ARG

LYS

GLN

ILE

GLU

ILE

ALA

LYS

12

THR

LYS

MET

PRO

ASP

LEU

ASN

ALA

ASN

SER

13

LEU

GLU

ALA

MET

LYS

ILE

GLU

GLY

14

THR

ALA

LYS

SER

MET

GLY

ILE

GLU

VAL

15

ASP

Samples:

L11_sample_1: Ribosomal protein L11, [U-95% 13C; U-95% 15N], 1.3 mM; potassium phosphate 25 mM; potassium chloride 50 mM

L11_sample_2: Ribosomal protein L11, [U-15N], 1.5 mM; potassium phosphate 25 mM; potassium chloride 50 mM

Normal_Conditions: pH: 6.1 na; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	not available	not available	not available
1H-13C HSQC	not available	not available	not available
1H-13C CT-HSQC	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HNCACB	not available	not available	not available
HNCO	not available	not available	not available
HCC(CO)NH	not available	not available	not available
CC(CO)NH	not available	not available	not available
HBHA(CO)NH	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
HCCH-COSY	not available	not available	not available

Software:

XEASY v1.3 - analysis of 2D and 3D NMR data

NMR spectrometers:

Bruker DRX 600 MHz
Bruker DRX 800 MHz
Varian UnityInova 600 MHz
Varian UnityInova 750 MHz

BMRB	7307
PDB	1EG0 1GIY 1JQM 1JQS 1JQT 1MJ1 1ML5 1MMS 1MVR 1OLN 1PN7 1PN8 1R2W 1R2X 1YL3 2B66 2B9N 2B9P 2JQ7 2K3F 487D
EMBL	CAA77859
GB	AAD35537 ABQ46490 ACB08837 ADA66341 AGL49376
REF	NP_228264 WP_004081512 WP_011943108 WP_038033608 YP_001244066
SP	A5IJW7 B1L939 P29395
AlphaFold	A5IJW7 B1L939 P29395