BMRB Entry 5737
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5737
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
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Citation: Gavathiotis, E.; Searle, M.. "Structure of the Parallel-stranded DNA Quadruplex d(TTAGGGT)4 Containing
the Human Telomeric Repeat: Evidence for A-tetrad Formation from NMR and
Molecular Dynamics Simulations" Org. Biomol. Chem. 1, 1650-1656 (2003).
PubMed: 12926351
Assembly members:
5'-D(*TP*TP*AP*GP*GP*GP*T)-3', polymer, 7 residues, Formula weight is not available
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: .
Entity Sequences (FASTA):
5'-D(*TP*TP*AP*GP*GP*GP*T)-3': TTAGGGT
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 63 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | TTAGGGT chain A | 1 |
| 2 | TTAGGGT chain B | 1 |
| 3 | TTAGGGT chain C | 1 |
| 4 | TTAGGGT chain D | 1 |
Entities:
Entity 1, TTAGGGT chain A 7 residues - Formula weight is not available
| 1 | DT | DT | DA | DG | DG | DG | DT |
Samples:
sample_1: 5'-D(*TP*TP*AP*GP*GP*GP*T)-3' 6.4 mM; KCl 100 mM; K2HPO4 10 mM; EDTA 0.1 mM; NaN3 0.1 mM; H2O 90%; D2O 10%
sample_cond_1: pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | sample_cond_1 |
| 2D TOCSY | sample_1 | not available | sample_cond_1 |
| DQF-COSY | sample_1 | not available | sample_cond_1 |
Software:
xwinnmr v2.6 - collection, processing
ANSIG vv3.3 - data analysis
AMBER v6 - refinement
NMR spectrometers:
- Bruker DRX 600 MHz