BMRB Entry 6040
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6040
MolProbity Validation Chart
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NMR-STAR v3 text file.
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Title: SP-B C-terminal peptide in SDS micelles PubMed: 15568810
Deposition date: 2003-12-11 Original release date: 2005-01-14
Authors: Booth, V.; Waring, A.; Walther, F.; Keough, K.
Citation: Booth, V.; Waring, A.; Walther, F.; Keough, K.. "NMR structures of the C-terminal segment of surfactant protein B in detergent micelles and hexafluoro-2-propanol." Biochemistry 43, 15187-15194 (2004).
Assembly members:
Pulmonary surfactant-associated protein B, polymer, 16 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
Pulmonary surfactant-associated protein B: GRMLPQLVCRLVLRCS
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 118 |
| 15N chemical shifts | 6 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Pulmonary surfactant-associated protein B | 1 |
Entities:
Entity 1, Pulmonary surfactant-associated protein B 16 residues - Formula weight is not available
| 1 | GLY | ARG | MET | LEU | PRO | GLN | LEU | VAL | CYS | ARG | ||||
| 2 | LEU | VAL | LEU | ARG | CYS | SER |
Samples:
sample_1: Pulmonary surfactant-associated protein B, [15N]-Leu, Val, 2 mM; sodium dodecyl sulfate, [U-2H], 200 mM; DSS 2 mM; H2O 90%; D2O 10%
sample_cond_1: pH: 6.9; temperature: 298 K; ionic strength: 0 M; pressure: 1 atm
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D TOCSY | not available | not available | not available |
| 2D NOESY | not available | not available | not available |
| 3D 15N-separated NOESY | not available | not available | not available |
Software:
NMRPipe v2.2 - processing
NMRView v5.0.4 - data analysis
CNS v1.2 - structure solution, refinement
Ensemble v1 - data analysis
NMR spectrometers:
- Bruker AVANCE 500 MHz
Related Database Links:
| BMRB | 18809 6741 |
| PDB | |
| DBJ | BAG37452 BAG64767 |
| GB | AAA36628 AAA60212 AAA88099 AAB59541 AAH32785 |
| REF | NP_000533 NP_942140 XP_003816622 XP_003816624 XP_005264544 |
| SP | P07988 |
| AlphaFold | P07988 P07988 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts