BMRB Entry 6193

Name: 1H, 13C, 15N PSD-95 PDZ3 NMR Assignments, pH 7, 20C
Published: 2004-10-01

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6193

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, 15N PSD-95 PDZ3 NMR Assignments, pH 7, 20C

Deposition date:

2004-04-26

Original release date:

2004-10-01

Authors:

Ukpabi, Nkoli; Sharma, Sudhir; Spaller, Mark; Tsang, Pearl

Citation:

Citation: Ukpabi, Nkoli; Sharma, Sudhir; Spaller, Mark; Tsang, Pearl. "Letter to the Editor: 1H, 15N and 13C Backbone and Side Chain Assignments of PSD-95 PDZ3 protein" J. Biomol. NMR 30, 111-112 (2004).
PubMed: 15452444

Assembly members:

Assembly members:
PSD-95 PDZ3, polymer, 109 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Norway rat Taxonomy ID: 10116 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rattus norvegicus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PSD-95 PDZ3: GSPEFLGEEDIPREPRRIVI HRGSTGLGFNIVGGEDGEGI FISFILAGGPADLSGELRKG DQILSVNGVDLRNASHEQAA IALKNAGQTVTIIAQYKPEE YSRFEANSR

Data sets:

assigned_chemical_shifts
- PSD-95_PDZ3_neutral_pH

Data type	Count
13C chemical shifts	328
15N chemical shifts	118
1H chemical shifts	580

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PSD-95 PDZ3	1

Entities:

Entity 1, PSD-95 PDZ3 109 residues - Formula weight is not available

1

GLY

SER

PRO

GLU

PHE

LEU

GLY

GLU

ASP

2

ILE

PRO

ARG

GLU

PRO

ARG

ILE

VAL

ILE

3

HIS

ARG

GLY

SER

THR

GLY

LEU

GLY

PHE

ASN

4

ILE

VAL

GLY

GLU

ASP

GLY

GLU

GLY

ILE

5

PHE

ILE

SER

PHE

ILE

LEU

ALA

GLY

PRO

6

ALA

ASP

LEU

SER

GLY

GLU

LEU

ARG

LYS

GLY

7

ASP

GLN

ILE

LEU

SER

VAL

ASN

GLY

VAL

ASP

8

LEU

ARG

ASN

ALA

SER

HIS

GLU

GLN

ALA

9

ILE

ALA

LEU

LYS

ASN

ALA

GLY

GLN

THR

VAL

10

THR

ILE

ALA

GLN

TYR

LYS

PRO

GLU

11

TYR

SER

ARG

PHE

GLU

ALA

ASN

SER

ARG

Samples:

sample_1: PSD-95 PDZ3, [U-95% 13C; U-95% 15N], 0.562 – 0.562 mM

Neutral_pH_20C: pH: 7.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	sample_1	not available	Neutral_pH_20C
HN(CO)CA	sample_1	not available	Neutral_pH_20C
HNCO	sample_1	not available	Neutral_pH_20C
HCCH-TOCSY	sample_1	not available	Neutral_pH_20C
TOCSY-HSQC	sample_1	not available	Neutral_pH_20C
NOESY-HSQC	sample_1	not available	Neutral_pH_20C
CBCACONH	sample_1	not available	Neutral_pH_20C
HNHBHA	sample_1	not available	Neutral_pH_20C

Software:

NMRPipe v2.2, Rev 2002.365.14.32 - Processing of 2D & 3D data

NMR spectrometers:

Bruker DMX-Avance 500 MHz
Varian INOVA 600 MHz

BMRB	18516
PDB	1BE9 1BFE 1TP3 1TP5 1TQ3 3I4W 3K82
REF	XP_005669278