BMRB Entry 6241

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6241
MolProbity Validation Chart

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Title:
Assignment of the 1H, 13C, and 15N resonances of the josephin domain of ataxin-3
Deposition date:
2004-06-20
Original release date:
2005-01-07
Authors:
Nicastro, Giuseppe; Masino, Laura; Frenkiel, Thomas; Kelly, Geoff; McCormick, John; Menon, Raj; Pastore, Annalisa
Citation:

Citation: Nicastro, Giuseppe; Masino, Laura; Frenkiel, Thomas; Kelly, Geoff; McCormick, John; Menon, Rajesh; Pastore, Annalisa. "Letter to the Editor: Assignment of the 1H, 13C, and 15N resonances of the josephin domain of human ataxin-3"  J. Biomol. NMR 30, 457-458 (2004).

Assembly members:

Assembly members:
ataxin-3, polymer, 182 residues, 21165.3 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ataxin-3: MESIFHEKQEGSLCAQHCLN NLLQGEYFSPVELSSIAHQL DEEERMRMAEGGVTSEDYRT FLQQPSGNMDDSGFFSIQVI SNALKVWGLELILFNSPEYQ RLRIDPINERSFICNYKEHW FTVRKLGKQWFNLNSLLTGP ELISDTYLALFLAQLQQEGY SIFVVKGDLPDCEADQLLQM IR

Data sets:
Data typeCount
1H chemical shifts1333
13C chemical shifts814
15N chemical shifts203

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1josephin domain1

Entities:

Entity 1, josephin domain 182 residues - 21165.3 Da.

1   METGLUSERILEPHEHISGLULYSGLNGLU
2   GLYSERLEUCYSALAGLNHISCYSLEUASN
3   ASNLEULEUGLNGLYGLUTYRPHESERPRO
4   VALGLULEUSERSERILEALAHISGLNLEU
5   ASPGLUGLUGLUARGMETARGMETALAGLU
6   GLYGLYVALTHRSERGLUASPTYRARGTHR
7   PHELEUGLNGLNPROSERGLYASNMETASP
8   ASPSERGLYPHEPHESERILEGLNVALILE
9   SERASNALALEULYSVALTRPGLYLEUGLU
10   LEUILELEUPHEASNSERPROGLUTYRGLN
11   ARGLEUARGILEASPPROILEASNGLUARG
12   SERPHEILECYSASNTYRLYSGLUHISTRP
13   PHETHRVALARGLYSLEUGLYLYSGLNTRP
14   PHEASNLEUASNSERLEULEUTHRGLYPRO
15   GLULEUILESERASPTHRTYRLEUALALEU
16   PHELEUALAGLNLEUGLNGLNGLUGLYTYR
17   SERILEPHEVALVALLYSGLYASPLEUPRO
18   ASPCYSGLUALAASPGLNLEULEUGLNMET
19   ILEARG

Samples:

sample_1: ataxin-3, [U-95% 13C; U-95% 15N], 0.4 mM

sample_condition_1: pH: 6.5; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
15N-NOESY-HSQCnot availablenot availablenot available
13C-NOESY-HSQCnot availablenot availablenot available
HNCAnot availablenot availablenot available
HN(CO)CAnot availablenot availablenot available
HNCOnot availablenot availablenot available
HN(CA)CBnot availablenot availablenot available
C(CO)NHnot availablenot availablenot available
H(CCO)NHnot availablenot availablenot available
HCCH-TOCSYnot availablenot availablenot available
CBCA(CO)NHnot availablenot availablenot available

Software:

nmrDraw - peak assignments

nmrPipe - peak assignments

XEASY - peak assignments

NMR spectrometers:

  • Varian INOVA 600 MHz
  • Varian INOVA 800 MHz

Related Database Links:

BMRB 17333 6742
PDB
DBJ BAB18798 BAB25825 BAB55645 BAB55646 BAC27155
EMBL CAA72986
GB AAB33571 AAB63352 AAB63353 AAB63354 AAH33711
REF NP_001092686 NP_001116553 NP_001124408 NP_001158250 NP_001161386
SP O35815 P54252 Q9CVD2
TPG DAA17354
AlphaFold O35815 P54252 Q9CVD2

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks