BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6405

Title: Backbone 1H, 13C, and 15N Chemical Shift Assignments for the first cadherin domain of Cadherin-related neuronal receptor(CNR)/ Protocadherin alpha   PubMed: 15929006

Deposition date: 2004-11-30 Original release date: 2005-12-15

Authors: Umitsu, Masataka; Morishita, Hirofumi; Murata, Yoji; Udaka, Keiko; Akutsu, Hideo; Yagi, Takeshi; Ikegami, Takahisa

Citation: Umitsu, Masataka; Morishita, Hirofumi; Murata, Yoji; Udaka, Keiko; Akutsu, Hideo; Yagi, Takeshi; Ikegami, Takahisa. "Letter to the Editor: 1H, 13C and 15N resonance assignments of the first cadherin domain of Cadherin-related neuronal receptor (CNR)/protocadherin alpha."  J. Biomol. NMR 31, 365-366 (2005).

Assembly members:
CNR-EC1, polymer, 103 residues, Formula weight is not available

Natural source:   Common Name: mouse   Taxonomy ID: 10090   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Mus musculus

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
CNR-EC1: GNSQIHYSIPEEAKHGTFVG RIAQDLGLELTELVPRLFRV ASKDRGDLLEVNLQNGILFV NSRIDREELCGRSAECSIHL EVIVDRPLQVFHVEVEVRDI NDN

Data sets:
Data typeCount
13C chemical shifts338
15N chemical shifts86
1H chemical shifts622

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CNR-EC11

Entities:

Entity 1, CNR-EC1 103 residues - Formula weight is not available

1   GLYASNSERGLNILEHISTYRSERILEPRO
2   GLUGLUALALYSHISGLYTHRPHEVALGLY
3   ARGILEALAGLNASPLEUGLYLEUGLULEU
4   THRGLULEUVALPROARGLEUPHEARGVAL
5   ALASERLYSASPARGGLYASPLEULEUGLU
6   VALASNLEUGLNASNGLYILELEUPHEVAL
7   ASNSERARGILEASPARGGLUGLULEUCYS
8   GLYARGSERALAGLUCYSSERILEHISLEU
9   GLUVALILEVALASPARGPROLEUGLNVAL
10   PHEHISVALGLUVALGLUVALARGASPILE
11   ASNASPASN

Samples:

sample_1: CNR-EC1 0.1 mM; D2O 99%; Tris-HCl 50 mM; NaCl 80 mM; CaCl2 1.5 mM; NaN3 0.02 %(w/v); PefaBloc 0.3 mM

sample_2: CNR-EC1, [U-15N], 0.1 mM; H2O 92%; D2O 8%; Tris-HCl 50 mM; NaCl 80 mM; CaCl2 1.5 mM; NaN3 0.02 %(w/v); PefaBloc 0.3 mM

sample_3: CNR-EC1, [U-15N; U-13C], 0.1 mM; H2O 92%; D2O 8%; Tris-HCl 50 mM; NaCl 80 mM; CaCl2 1.5 mM; NaN3 0.02 %(w/v); PefaBloc 0.3 mM

sample_4: CNR-EC1, [U-15N; U-13C], 0.1 mM; D2O 99%; Tris-HCl 50 mM; NaCl 80 mM; CaCl2 1.5 mM; NaN3 0.02 %(w/v); PefaBloc 0.3 mM

conditions_1: pH: 8.0; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
1H-1H-TOCSYnot availablenot availableconditions_1
15N-1H-HSQCnot availablenot availableconditions_1
15N-edited TOCSYnot availablenot availableconditions_1
HNCOnot availablenot availableconditions_1
HN(CA)COnot availablenot availableconditions_1
CBCA(CO)NHnot availablenot availableconditions_1
HNCACBnot availablenot availableconditions_1
HBHA(CBCACO)NHnot availablenot availableconditions_1
C(CO)NHnot availablenot availableconditions_1
H(CCO)NHnot availablenot availableconditions_1
13C-1H-HSQCnot availablenot availableconditions_1
HCCH-TOCSYnot availablenot availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Bruker DRX 800 MHz

Related Database Links:

PDB
DBJ BAA29045 BAA29048 BAA29052 BAD06369 BAE28788
GB AAH60211 AAH85793 AAK26051 AAM93577 AAM93579
REF NP_001167625 NP_031792 NP_446385 XP_001476008
SP O88689 Q767I8

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts