BMRB Entry 6407

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PDB ID: 2fk4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR6407
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 15N resonance assignment of the C-terminal domain of Human Papillomavirus Oncoprotein E6

Deposition date:

2004-12-02

Original release date:

2005-03-18

Authors:

Nomine, Yves; Trave, Gilles; Kieffer, Bruno

Citation:

Citation: Nomine, Yves; Charbonnier, Sebastian; Miguet, Laurent; Potier, Noelle; Van Dorsselaer, Alain; Atkinson, R.; Trave, Gilles; Kieffer, Bruno. "1H and 15N resonance assignment, secondary structure and dynamic behaviour of the C-terminal domain of human papillomavirus Oncoprotein E6" J. Biomol. NMR 31, 129-141 (2005).

Assembly members:

Assembly members:
C terminal domain of E6, polymer, 75 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Viruses Kingdom: dsDNA viruses Genus/species: Papillomavirus Human Papillomavirus type E6

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C terminal domain of E6: GAMSYSLYGTTLEQQYNKPL SDLLIRCINCQKPLSPEEKQ RHLDKKQRFHNIRGRWTGRC MSCSRSSRTRRETQL

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
15N chemical shifts	78
1H chemical shifts	513

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HPV16 E6 C-terminal domain	1
2	ZINC (II) ION	2

Entities:

Entity 1, HPV16 E6 C-terminal domain 75 residues - Formula weight is not available

1

GLY

ALA

MET

SER

TYR

SER

LEU

TYR

GLY

THR

2

THR

LEU

GLU

GLN

TYR

ASN

LYS

PRO

LEU

3

SER

ASP

LEU

ILE

ARG

CYS

ILE

ASN

CYS

4

GLN

LYS

PRO

LEU

SER

PRO

GLU

LYS

GLN

5

ARG

HIS

LEU

ASP

LYS

GLN

ARG

PHE

HIS

6

ASN

ILE

ARG

GLY

ARG

TRP

THR

GLY

ARG

CYS

7

MET

SER

CYS

SER

ARG

SER

ARG

THR

ARG

8

ARG

GLU

THR

GLN

LEU

Entity 2, ZINC (II) ION - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: C terminal domain of E6, [U-15N], 0.3 – 1.2 mM; Tris-HCl deuterated 20 mM; NaCl 50 mM; dithiothreitol 1 mM; deuterium oxide 10%

conditions_1: pH: 6.8; temperature: 288 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	sample_1	not available	conditions_1
15N NOESY-HSQC	sample_1	not available	conditions_1
15N TOCSY-HSQC	sample_1	not available	conditions_1

Software:

NMRPipe -

XEASY -

NMR spectrometers:

Bruker DMX 500 MHz