BMRB Entry 6453

Name: The solution structure of YggX from Escherichia coli
Published: 2005-12-14

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6453

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: The solution structure of YggX from Escherichia coli PubMed: 15883188

Deposition date: 2005-01-07 Original release date: 2005-12-14

Authors: Osborne, Michael; Siddiqui, Nadeem; Dirk, Landgraf; Pablo, Pomposiello; Kalle, Gehring

Citation: Osborne, Michael; Siddiqui, Nadeem; Landgraf, Dirk; Pomposiello, Pablo; Gehring, Kalle. "The solution structure of the oxidative stress-related protein YggX from Escherichia coli." Protein Sci. 14, 1673-1678 (2005).

Assembly members:
yggx, polymer, 100 residues, Formula weight is not available

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):
yggx: MGSRTIFCTFLQREAEGQDF QLYPGELGKRIYNEISKEAW AQWQHKQTMLINEKKLNMMN AEHRKLLEQEMVNFLFEGKE VHIEGYTPEDKKLEHHHHHH

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	619
13C chemical shifts	330
15N chemical shifts	107

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	yggx	1

Entities:

Entity 1, yggx 100 residues - Formula weight is not available

1	MET	GLY	SER	ARG	THR	ILE	PHE	CYS	THR	PHE
2	LEU	GLN	ARG	GLU	ALA	GLU	GLY	GLN	ASP	PHE
3	GLN	LEU	TYR	PRO	GLY	GLU	LEU	GLY	LYS	ARG
4	ILE	TYR	ASN	GLU	ILE	SER	LYS	GLU	ALA	TRP
5	ALA	GLN	TRP	GLN	HIS	LYS	GLN	THR	MET	LEU
6	ILE	ASN	GLU	LYS	LYS	LEU	ASN	MET	MET	ASN
7	ALA	GLU	HIS	ARG	LYS	LEU	LEU	GLU	GLN	GLU
8	MET	VAL	ASN	PHE	LEU	PHE	GLU	GLY	LYS	GLU
9	VAL	HIS	ILE	GLU	GLY	TYR	THR	PRO	GLU	ASP
10	LYS	LYS	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

Samples:

sample_1: yggx, [U-95% 13C; U-95% 15N], 0.5 – 1.2 mM; NaCl 150 mM

cond_1: pH: 6.3; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N HSQC	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HBHA(CBCACO)NH	not available	not available	not available
C(CO)NH-TOCSY	not available	not available	not available
HC(CO)NH-TOCSY	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
3D 15N-NOESY	not available	not available	not available
3D 13C-NOESY	not available	not available	not available
4D 13C-13C-NOESY	not available	not available	not available

Software:

NMRpipe -

CNS -

NMRVIEW -

CYANA -

NMR spectrometers:

BRUKER DRX 600 MHz

PDB	1YHD
DBJ	BAB37261 BAE77025 BAG66700 BAG78755 BAI27249
EMBL	CAP77399 CAQ33272 CAQ90397 CAQ99910 CAR04479
GB	AAA69129 AAC75999 AAG58093 AAN44440 AAN81998
REF	NP_289534 NP_311865 NP_417437 NP_708733 NP_755425
SP	A1AFE8 A7ZR88 B1ISK7 B1LDH2 B1XFC2
AlphaFold	B1LDH2 B1XFC2 B1ISK7 A7ZR88 A1AFE8

Biological Magnetic Resonance Data Bank