BMRB Entry 6509

Title:
Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot
Deposition date:
2005-02-17
Original release date:
2005-09-08
Authors:
Cornish, P.; Hennig, M.; Giedroc, D.
Citation:

Citation: Cornish, P.; Hennig, M.; Giedroc, D.. "A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting."  Proc. Natl. Acad. Sci. U. S. A. 102, 12694-12699 (2005).
PubMed: 16123125

Assembly members:

Assembly members:
ScYLV RNA pseudoknot, polymer, 31 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Sugarcane Yellow Leaf Virus   Taxonomy ID: 94290   Superkingdom: Viruses   Kingdom: not available   Genus/species: Polerovirus Sugarcane yellow leaf virus

Experimental source:

Experimental source:   Production method: enzymatic semi-synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ScYLV RNA pseudoknot: AAAGUGGXGCCGACCACUUA AAAACACCGGA

Data sets:
Data typeCount
13C chemical shifts217
15N chemical shifts96
31P chemical shifts28

Additional metadata:

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  • Samples and Experiments
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  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1ScYLV RNA pseudoknot1

Entities:

Entity 1, ScYLV RNA pseudoknot 31 residues - Formula weight is not available

1   AAAGUGGCHGC
2   CGACCACUUA
3   AAAACACCGG
4   A