BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 6561

Title: NMR structure of plantaricin a in dpc micelles, 20 structures   PubMed: 15805109

Deposition date: 2005-03-18 Original release date: 2005-08-22

Authors: Kristiansen, P.; Fimland, G.; Mantzilas, D.; Nissen-Meyer, J.

Citation: Kristiansen, P.; Fimland, G.; Mantzilas, D.; Nissen-Meyer, J.. "Structure and mode of action of the membrane-permeabilizing antimicrobial peptide pheromone plantaricin A"  J. Biol. Chem. 280, 22945-22950 (2005).

Assembly members:
plantaricin A, polymer, 26 residues, Formula weight is not available

Natural source:   Common Name: Lactobacillus plantarum   Taxonomy ID: 1590   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Lactobascillus Plantarum

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
plantaricin A: KSSAYSLQMGATAIKQVKKL FKKWGW

Data sets:
Data typeCount
1H chemical shifts179

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1plantaricin A1

Entities:

Entity 1, plantaricin A 26 residues - Formula weight is not available

1   LYSSERSERALATYRSERLEUGLNMETGLY
2   ALATHRALAILELYSGLNVALLYSLYSLEU
3   PHELYSLYSTRPGLYTRP

Samples:

sample_1: plantaricin A 2.9 mM

sample_cond_1: pH*: 4; temperature: 298 K; ionic strength: 0 M; pressure: 1 atm

Experiments:

NameSampleSample stateSample conditions
NOESYnot availablenot availablenot available
TOCSYnot availablenot availablenot available
DQCOSYnot availablenot availablenot available
1H-15N HSQCnot availablenot availablenot available

Software:

CYANA v1.1 - refinement, structure calculation, automated assignemnt, structure annealing

TALOS v98.040.21.02 - Dihedral angle prediction

NMR spectrometers:

  • Varian INOVA 800 MHz

Related Database Links:

PDB
DBJ BAI99564
EMBL CAA53069 CAA64204 CCC77922
GB ABD15221 ACO06045 ADE08251 ADN97568 AEI26312
REF WP_003641979 YP_003923662 YP_004888436
SP P80214
AlphaFold P80214