BMRB Entry 6610
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6610
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Title: apg8a.title PubMed: 16211491
Deposition date: 2005-04-26 Original release date: 2005-10-26
Authors: Chae, Young Kee; Lee, Kyunghee; Markley, John
Citation: Chae, Young Kee; Lee, Kyunghee; Markley, John. "1H, 15N and 13C Resonance Assignments of a Protein Involved in the Autophagy Process, At4g21980.1 from Arabidopsis thaliana" J. Biomol. NMR 32, 337-337 (2005).
Assembly members:
apg8a, polymer, 117 residues, Formula weight is not available
Natural source: Common Name: arabidopsis thaliana Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: arabidopsis thaliana
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
apg8a: MAKSSFKISNPLEARMSESS
RIREKYPDRIPVIVEKAGQS
DVPDIDKKKYLVPADLTVGQ
FVYVVRKRIKLGAEKAIFVF
VKNTLPPTAALMSAIYEEHK
DEDGFLYMTYSGENTFG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 282 |
| 15N chemical shifts | 95 |
| 1H chemical shifts | 188 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | apg8a | 1 |
Entities:
Entity 1, apg8a 117 residues - Formula weight is not available
| 1 | MET | ALA | LYS | SER | SER | PHE | LYS | ILE | SER | ASN | ||||
| 2 | PRO | LEU | GLU | ALA | ARG | MET | SER | GLU | SER | SER | ||||
| 3 | ARG | ILE | ARG | GLU | LYS | TYR | PRO | ASP | ARG | ILE | ||||
| 4 | PRO | VAL | ILE | VAL | GLU | LYS | ALA | GLY | GLN | SER | ||||
| 5 | ASP | VAL | PRO | ASP | ILE | ASP | LYS | LYS | LYS | TYR | ||||
| 6 | LEU | VAL | PRO | ALA | ASP | LEU | THR | VAL | GLY | GLN | ||||
| 7 | PHE | VAL | TYR | VAL | VAL | ARG | LYS | ARG | ILE | LYS | ||||
| 8 | LEU | GLY | ALA | GLU | LYS | ALA | ILE | PHE | VAL | PHE | ||||
| 9 | VAL | LYS | ASN | THR | LEU | PRO | PRO | THR | ALA | ALA | ||||
| 10 | LEU | MET | SER | ALA | ILE | TYR | GLU | GLU | HIS | LYS | ||||
| 11 | ASP | GLU | ASP | GLY | PHE | LEU | TYR | MET | THR | TYR | ||||
| 12 | SER | GLY | GLU | ASN | THR | PHE | GLY |
Samples:
apg8a.sample: apg8a, [U-15N; U-13C], 1.0 mM
sample_condition_label: pH: 7.0; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| n15-hsqc | not available | not available | not available |
| hnca | not available | not available | not available |
| hncoca | not available | not available | not available |
| cbcaconh | not available | not available | not available |
| n15-tocsy | not available | not available | not available |
| hnco | not available | not available | not available |
Software:
No software information available
NMR spectrometers:
- Bruker DMX 750 MHz
- Varian Inova 800 MHz
Related Database Links:
| DBJ | BAB88387 |
| EMBL | CAA18101 CAB79153 |
| GB | AAM62580 AAM70188 AAN72035 AAP21330 AEE84537 |
| REF | NP_001078424 NP_567642 XP_002869850 XP_006284768 XP_006413700 |
| SP | Q8LEM4 |
| AlphaFold | Q8LEM4 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts