BMRB Entry 6754
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6754
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Title: Backbone and sidechain 1H, 13C, and 15N Chemical Shift Assignments for the PDZ domain of alpha syntrophin PubMed: 16252003
Deposition date: 2005-07-27 Original release date: 2007-01-29
Authors: Yan, Jing; Wen, Wenyu; Xu, Weiguang; Long, Jia-fu; Adams, Marvin; Froehner, Stanley; Zhang, Mingjie
Citation: Yan, Jing; Wen, Wenyu; Xu, Weiguang; Long, Jia-fu; Adams, Marvin; Froehner, Stanley; Zhang, Mingjie. "Structure of the split PH domain and distinct lipid-binding properties of the PH-PDZ supramodule of alpha-syntrophin." EMBO J. 24, 3985-3995 (2005).
Assembly members:
PDZ domain, polymer, 87 residues, Formula weight is not available
Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
PDZ domain: RRRVTVRKADAGGLGISIKG
GRENKMPILISKIFKGLAAD
QTEALFVGDAILSVNGEDLS
SATHDEAVQALKKTGKEVVL
EVKYMKE
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 266 |
| 15N chemical shifts | 84 |
| 1H chemical shifts | 582 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | PDZ domain | 1 |
Entities:
Entity 1, PDZ domain 87 residues - Formula weight is not available
| 1 | ARG | ARG | ARG | VAL | THR | VAL | ARG | LYS | ALA | ASP | ||||
| 2 | ALA | GLY | GLY | LEU | GLY | ILE | SER | ILE | LYS | GLY | ||||
| 3 | GLY | ARG | GLU | ASN | LYS | MET | PRO | ILE | LEU | ILE | ||||
| 4 | SER | LYS | ILE | PHE | LYS | GLY | LEU | ALA | ALA | ASP | ||||
| 5 | GLN | THR | GLU | ALA | LEU | PHE | VAL | GLY | ASP | ALA | ||||
| 6 | ILE | LEU | SER | VAL | ASN | GLY | GLU | ASP | LEU | SER | ||||
| 7 | SER | ALA | THR | HIS | ASP | GLU | ALA | VAL | GLN | ALA | ||||
| 8 | LEU | LYS | LYS | THR | GLY | LYS | GLU | VAL | VAL | LEU | ||||
| 9 | GLU | VAL | LYS | TYR | MET | LYS | GLU |
Samples:
sample_1: PDZ domain, [U-13C; U-15N], 1 mM
sample_2: PDZ domain, [U-15N], 1 mM
conditions_1: pH: 7; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| HNCO | not available | not available | not available |
| HNCA | not available | not available | not available |
| HN(CO)CA | not available | not available | not available |
| HNCACB | not available | not available | not available |
| CBCA(CO)NH | not available | not available | not available |
| HCCH-TOCSY | not available | not available | not available |
| 3D 15N-separated NOESY | not available | not available | not available |
| 3D 15C-separated NOESY | not available | not available | not available |
Software:
No software information available
NMR spectrometers:
- Varian Inova 750 MHz
Related Database Links:
| BMRB | 6752 |
| PDB | |
| DBJ | BAE23334 BAF84683 BAG63252 BAJ20452 |
| GB | AAA68937 AAB36398 AAC50448 AAC52119 AAH18546 |
| PRF | 2208351A 2208451B |
| REF | NP_001069366 NP_001075802 NP_001094371 NP_001253168 NP_003089 |
| SP | Q0P5E6 Q13424 Q28626 Q61234 |
| TPG | DAA23263 |
| AlphaFold | Q61234 Q0P5E6 Q13424 Q28626 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts