BMRB Entry 7020
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7020
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Title: Chemical Shift Assignments for a Subunit of RNA Polymerase II PubMed: 16632472
Deposition date: 2006-03-15 Original release date: 2006-09-22
Authors: Kang, Xue; Xia, Bin; Jin, Changwen
Citation: Kang, Xue; Hu, Y.; Li, Y.; Guo, X.; Jiang, X.; Lai, L.; Xia, Bin; Jin, Changwen. "Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases" J. Biol. Chem. 281, 18216-18226 (2006).
Assembly members:
hRPB8, polymer, 150 residues, Formula weight is not available
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
hRPB8: MAGILFEDIFDVKDIDPEGK
KFDRVSRLHCESESFKMDLI
LDVNIQIYPVDLGDKFRLVI
ASTLYEDGTLDDGEYNPTDD
RPSRADQFEYVMYGKVYRIE
GDETSTEAATRLSAYVSYGG
LLMRLQGDANNLHGFEVDSR
VYLLMKKLAF
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 514 |
15N chemical shifts | 132 |
1H chemical shifts | 761 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | RNA Polymerase II subunit | 1 |
Entities:
Entity 1, RNA Polymerase II subunit 150 residues - Formula weight is not available
1 | MET | ALA | GLY | ILE | LEU | PHE | GLU | ASP | ILE | PHE | |
2 | ASP | VAL | LYS | ASP | ILE | ASP | PRO | GLU | GLY | LYS | |
3 | LYS | PHE | ASP | ARG | VAL | SER | ARG | LEU | HIS | CYS | |
4 | GLU | SER | GLU | SER | PHE | LYS | MET | ASP | LEU | ILE | |
5 | LEU | ASP | VAL | ASN | ILE | GLN | ILE | TYR | PRO | VAL | |
6 | ASP | LEU | GLY | ASP | LYS | PHE | ARG | LEU | VAL | ILE | |
7 | ALA | SER | THR | LEU | TYR | GLU | ASP | GLY | THR | LEU | |
8 | ASP | ASP | GLY | GLU | TYR | ASN | PRO | THR | ASP | ASP | |
9 | ARG | PRO | SER | ARG | ALA | ASP | GLN | PHE | GLU | TYR | |
10 | VAL | MET | TYR | GLY | LYS | VAL | TYR | ARG | ILE | GLU | |
11 | GLY | ASP | GLU | THR | SER | THR | GLU | ALA | ALA | THR | |
12 | ARG | LEU | SER | ALA | TYR | VAL | SER | TYR | GLY | GLY | |
13 | LEU | LEU | MET | ARG | LEU | GLN | GLY | ASP | ALA | ASN | |
14 | ASN | LEU | HIS | GLY | PHE | GLU | VAL | ASP | SER | ARG | |
15 | VAL | TYR | LEU | LEU | MET | LYS | LYS | LEU | ALA | PHE |
Samples:
sample_1: hRPB8, [U-13C; U-15N], 1 mM; sodium phosphate 20 mM; dithiothreitol 10 mM; H2O 95%; D2O 5%
conditions_1: pH: 6.3; pressure: 1 atm; temperature: 303 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
1H15N HSQC | sample_1 | not available | conditions_1 |
1H15N13C CBCACONH | sample_1 | not available | conditions_1 |
1H15N13C HNCACB | sample_1 | not available | conditions_1 |
Software:
NMRPipe - processing
NMR spectrometers:
- Bruker Avance 500 MHz
Related Database Links:
PDB | |
DBJ | BAE27163 BAE36495 BAE88588 BAG73557 |
EMBL | CAA89060 CAB92189 CAG03481 |
GB | AAA91458 AAD19908 AAH00739 AAH02306 AAH72811 |
REF | NP_001016113 NP_001017600 NP_001085470 NP_001128261 NP_001178994 |
SP | P52434 Q923G2 |
TPG | DAA33314 |
AlphaFold | P52434 Q923G2 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts