BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 7087

Title: 1H, 13C and 15N Assignments of the Dengue-4 Envelope Protein Domain III   PubMed: 17131034

Deposition date: 2006-04-24 Original release date: 2006-10-02

Authors: Volk, David; Lee, Yi-Chien; Li, Xin; Beasley, David; Barrett, Alan; Gorenstein, David

Citation: Volk, David; Lee, Yi-Chien; Li, Xin; Barrett, Alan; Gorenstein, David. "NMR Assignment of the Dengue-4 Virus Envelope Protein Domain III"  J. Biomol. NMR 36, 62-62 (2006).

Assembly members:
D4ED3, polymer, 112 residues, Formula weight is not available

Natural source:   Common Name: Dengue-4 virus strain 703-4   Taxonomy ID: 12637   Superkingdom: Viruses   Kingdom: not available   Genus/species: Flaviviridae Dengue-4

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
D4ED3: MEKLRIKGMSYTMCSGKFSI DKEMAETQHGTTVVKVKYEG AGAPCKVPIEIRDVNKEKVV GRIISSTPLAENTNSVTNIE LEPPFGDSYIVIGVGNSALT LHWFRKGSSIGK

Data sets:
Data typeCount
13C chemical shifts379
15N chemical shifts86
1H chemical shifts649

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1D4ED3 Monomer1

Entities:

Entity 1, D4ED3 Monomer 112 residues - Formula weight is not available

1   METGLULYSLEUARGILELYSGLYMETSER
2   TYRTHRMETCYSSERGLYLYSPHESERILE
3   ASPLYSGLUMETALAGLUTHRGLNHISGLY
4   THRTHRVALVALLYSVALLYSTYRGLUGLY
5   ALAGLYALAPROCYSLYSVALPROILEGLU
6   ILEARGASPVALASNLYSGLULYSVALVAL
7   GLYARGILEILESERSERTHRPROLEUALA
8   GLUASNTHRASNSERVALTHRASNILEGLU
9   LEUGLUPROPROPHEGLYASPSERTYRILE
10   VALILEGLYVALGLYASNSERALALEUTHR
11   LEUHISTRPPHEARGLYSGLYSERSERILE
12   GLYLYS

Samples:

sample_1: D4ED3, [U-13C; U-15N], 0.6 ± 0.05 mM

conditions_1: pH: 7.5; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
HNCAsample_1not availableconditions_1
HNCOsample_1not availableconditions_1
HNHAsample_1not availableconditions_1
HNCACBsample_1not availableconditions_1
CBCACONHsample_1not availableconditions_1
HCCONHsample_1not availableconditions_1
CCONHsample_1not availableconditions_1
HCCH-TOCSYsample_1not availableconditions_1
HCCH-TOCSY centered on aromatic C13sample_1not availableconditions_1
HBCBCGCDHDsample_1not availableconditions_1
HBCBCGCDHDHEsample_1not availableconditions_1
NOESY-HSQC (N15)sample_1not availableconditions_1
TOCSY-HSQC (N15)sample_1not availableconditions_1
1H,C13-HSQCsample_1not availableconditions_1
1H,N15-HSQCsample_1not availableconditions_1
HCACOCANHsample_1not availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Varian Inova 800 MHz
  • Varian Inova 700 MHz
  • Varian UnityPlus 600 MHz

Related Database Links:

PDB
DBJ BAC77234 BAC77235 BAC77236 BAC77238 BAC77239
EMBL CAD21677 CAD21678 CAD21679 CAD21680 CAD21681
GB AAA42964 AAB70676 AAB70677 AAB70678 AAB70679
PIR GNWVDF
REF NP_073286 NP_740317
SP P09866 Q2YHF0 Q58HT7 Q5UCB8
AlphaFold Q58HT7 P09866 Q2YHF0 Q5UCB8

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts