BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 7268

Title: 1H, 13C, and 15N Chemical Shift Assignments for the N-terminal Extracellular Domain of Truncated Cadherin   PubMed: 17180550

Deposition date: 2006-08-18 Original release date: 2007-01-09

Authors: Bang, Eunjung; Haussinger, Daniel; Stetefeld, Joerg; Ahrens, Thomas; Dames, Sonja; Grzesiek, Stephan

Citation: Bang, Eunjung; Haussinger, Daniel; Stetefeld, Joerg; Ahrens, Thomas; Grzesiek, Stephan; Dames, Sonja. "1H, 13C, and 15N chemical shift assignments for the N-terminal extracellular domain of T-cadherin"  J. Biomol. NMR 38, 179-179 (2007).

Assembly members:
N-terminal extracellular domain of truncated cadherin, polymer, 105 residues, 11741 Da.

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
N-terminal extracellular domain of truncated cadherin: SIVVSPILIPENQRQPFPRD VGKVVDSDRPERSKFRLTGK GVDQEPKGIFRINENTGSVS VTRTLDREVIAVYQLFVETT DVNGKTLEGPVPLEVIVIDQ NDNRP

Data sets:
Data typeCount
13C chemical shifts450
15N chemical shifts101
1H chemical shifts718

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1TCAD1 monomer1

Entities:

Entity 1, TCAD1 monomer 105 residues - 11741 Da.

1   SERILEVALVALSERPROILELEUILEPRO
2   GLUASNGLNARGGLNPROPHEPROARGASP
3   VALGLYLYSVALVALASPSERASPARGPRO
4   GLUARGSERLYSPHEARGLEUTHRGLYLYS
5   GLYVALASPGLNGLUPROLYSGLYILEPHE
6   ARGILEASNGLUASNTHRGLYSERVALSER
7   VALTHRARGTHRLEUASPARGGLUVALILE
8   ALAVALTYRGLNLEUPHEVALGLUTHRTHR
9   ASPVALASNGLYLYSTHRLEUGLUGLYPRO
10   VALPROLEUGLUVALILEVALILEASPGLN
11   ASNASPASNARGPRO

Samples:

sample_1: N-terminal extracellular domain of truncated cadherin, [U-98% 13C; U-99% 15N], 0.6 mM; TRIS 5.0 mM; NaCl 10.0 mM; EDTA 1.0 mM; TCEP 1.0 mM

conditions_1: pH: 7.8; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D HNCAnot availablenot availablenot available
3D HNCOnot availablenot availablenot available
3D CBCA(CO)NHnot availablenot availablenot available
3D HBHA(CBCACO)NHnot availablenot availablenot available
3D CCONH-TOCSYnot availablenot availablenot available
3D HCCH-TOCSYnot availablenot availablenot available
3D HNHAnot availablenot availablenot available
3D 15N NOESYnot availablenot availablenot available
3D 13C NOESYnot availablenot availablenot available

Software:

No software information available

NMR spectrometers:

  • Bruker DRX 600 MHz
  • Bruker DRX 800 MHz

Related Database Links:

PDB
DBJ BAA32411 BAG10735 BAH12826 BAH14247
EMBL CAH92850
GB AAA35624 AAB18911 AAB18912 AAH28624 AAH30653
REF NP_001103282 NP_001126665 NP_001207417 NP_001207418 NP_001248
SP P55290 Q5R5W6
AlphaFold P55290 Q5R5W6

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts