BMRB Entry 16755

Name: Complement assembly of two fragments of the streptococcal protein G B1 domain in aqueous solution
Published: 2010-03-24

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16755

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Complement assembly of two fragments of the streptococcal protein G B1 domain in aqueous solution

Deposition date:

2010-03-03

Original release date:

2010-03-24

Authors:

Kobayashi, Naohiro; Honda, Shinya; Yoshii, Hirofumi; Uedaira, Hatsuho; Munekata, Eisuke

Citation:

Citation: Kobayashi, Naohiro; Honda, Shinya; Yoshii, Hirofumi; Uedaira, Hatsuho; Munekata, Eisuke. "Complement assembly of two fragments of the streptococcal protein G B1 domain in aqueous solution" FEBS Lett. 366, 99-103 (1995).
PubMed: 7789539

Assembly members:

Assembly members:
N40, polymer, 40 residues, Formula weight is not available
C16, polymer, 16 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Streptococcus Taxonomy ID: 1301 Superkingdom: Bacteria Kingdom: not available Genus/species: Streptococcus not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
N40: DTYKLILNGKTLKGETTTEA VDAATAEKVFKQYANDNGVD
C16: GEWTYDDATKTFTVTE

Data sets:

binding_constants

Data type	Count
binding constants	1

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	N40	1
2	C16	2

Entities:

Entity 1, N40 40 residues - Formula weight is not available

1	ASP	THR	TYR	LYS	LEU	ILE	LEU	ASN	GLY	LYS
2	THR	LEU	LYS	GLY	GLU	THR	THR	THR	GLU	ALA
3	VAL	ASP	ALA	ALA	THR	ALA	GLU	LYS	VAL	PHE
4	LYS	GLN	TYR	ALA	ASN	ASP	ASN	GLY	VAL	ASP

Entity 2, C16 16 residues - Formula weight is not available

1

GLY

GLU

TRP

THR

TYR

ASP

ALA

THR

LYS

2

THR

PHE

THR

VAL

THR

GLU

Samples:

sample_1: N40 1.8 mM; C16 1.8 mM; phosphate buffer 50 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 5.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D HOHAHA	sample_1	isotropic	sample_conditions_1
2D ROESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

MOLSCRIPT, Kraulis, 1991 - visualization

NMR spectrometers:

Bruker AM 500 MHz
Bruker AMX 500 MHz
Bruker AMX 600 MHz

Related Database Links:

BMRB	15156 15380 16053 16444 16627 16873 16882 16958 17810 18397 19394 26630 15156 15380 16053 1639 16444 16627 16670 16873 16882 16958 17810 18397 19394 5151 5569 5654 5875 6280 6988 7280
PDB	1GB1 1IBX 1PGA 1PGB 1PN5 2CWB 2DEN 2GB1 2GI9 2I2Y 2I38 2J52 2J53 2JSV 2JU6 2K0P 2KBT 2KHU 2KHW 2KLK 2KN4 2KQ4 2KWD 2LGI 2MBB 2PLP 2QMT 2RMM 2RPV 3GB1 3MP9 3UI3 4KGS 4Q0C 1EM7 1FCC 1FD6 1GB1 1GB4 1IBX 1MPE 1MVK 1PGA 1PGB 1PN5 1Q10 1QKZ 1UWX 2CWB 2DEN 2GB1 2GI9 2I2Y 2I38 2IGG 2JSV 2JU6 2K0P 2KBT 2KHU 2KHW 2KLK 2KN4 2KQ4 2KWD 2LGI 2MBB 2ON8 2ONQ 2PLP 2QMT 2RMM 2RPV 3FIL 3GB1 3MP9 3U2S 3U4E 3UI3 3V3X 4DQO 4KGR 4KGS 4OZA 4OZB 4OZC
GB	AAA26599 AAA26600 AAY41168 AAA03280 AHW57457
EMBL	CAA37410
PIR	A45063

1	ASP	THR	TYR	LYS	LEU	ILE	LEU	ASN	GLY	LYS
2	THR	LEU	LYS	GLY	GLU	THR	THR	THR	GLU	ALA
3	VAL	ASP	ALA	ALA	THR	ALA	GLU	LYS	VAL	PHE
4	LYS	GLN	TYR	ALA	ASN	ASP	ASN	GLY	VAL	ASP

1	ASP	THR	TYR	LYS	LEU	ILE	LEU	ASN	GLY	LYS
2	THR	LEU	LYS	GLY	GLU	THR	THR	THR	GLU	ALA
3	VAL	ASP	ALA	ALA	THR	ALA	GLU	LYS	VAL	PHE
4	LYS	GLN	TYR	ALA	ASN	ASP	ASN	GLY	VAL	ASP

1	ASP	THR	TYR	LYS	LEU	ILE	LEU	ASN	GLY	LYS
2	THR	LEU	LYS	GLY	GLU	THR	THR	THR	GLU	ALA
3	VAL	ASP	ALA	ALA	THR	ALA	GLU	LYS	VAL	PHE
4	LYS	GLN	TYR	ALA	ASN	ASP	ASN	GLY	VAL	ASP