BMRB Entry 30816

Name: Au1 Domain of VEGF Readthrough Element
Published: 2022-05-26

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PDB ID: 7kub
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30816
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Au1 Domain of VEGF Readthrough Element

Deposition date:

2020-11-24

Original release date:

2022-05-26

Authors:

D'Souza, V.; Wagner, N.; Edwards, J.

Citation:

Citation: Wagner, N.; Edwards, J.; Abramovich, J.; Gupta, P.; Swaminathan, H.; Rouskin, S.; D'Souza, V.. "Stop codon readthrough in VEGF-A is regulated by complex signals" .

Assembly members:

Assembly members:
entity_1, polymer, 60 residues, 19268.506 Da.

Natural source:

Natural source: Common Name: cow Taxonomy ID: 9913 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Bos taurus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: CUGCUCUACCUUCACCAUGC CAAGUGGUCCCAGGCUGCAC CCAUGGCAGAAGGAGGGCAG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list
- spectral_peak_list_1
- spectral_peak_list_2

Data type	Count
1H chemical shifts	180

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 60 residues - 19268.506 Da.

1	C	U	G	C	U	C	U	A	C	C
2	U	U	C	A	C	C	A	U	G	C
3	C	A	A	G	U	G	G	U	C	C
4	C	A	G	G	C	U	G	C	A	C
5	C	C	A	U	G	G	C	A	G	A
6	A	G	G	A	G	G	G	C	A	G

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_5	isotropic	sample_conditions_2
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_3
2D 1H-1H NOESY	sample_3	isotropic	sample_conditions_3
2D 1H-1H NOESY	sample_4	isotropic	sample_conditions_3

BMRB Entry 30816

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	C	U	G	C	U	C	U	A	C	C
2	U	U	C	A	C	C	A	U	G	C
3	C	A	A	G	U	G	G	U	C	C
4	C	A	G	G	C	U	G	C	A	C
5	C	C	A	U	G	G	C	A	G	A
6	A	G	G	A	G	G	G	C	A	G

1	C	U	G	C	U	C	U	A	C	C
2	U	U	C	A	C	C	A	U	G	C
3	C	A	A	G	U	G	G	U	C	C
4	C	A	G	G	C	U	G	C	A	C
5	C	C	A	U	G	G	C	A	G	A
6	A	G	G	A	G	G	G	C	A	G

1	C	U	G	C	U	C	U	A	C	C
2	U	U	C	A	C	C	A	U	G	C
3	C	A	A	G	U	G	G	U	C	C
4	C	A	G	G	C	U	G	C	A	C
5	C	C	A	U	G	G	C	A	G	A
6	A	G	G	A	G	G	G	C	A	G