BMRB Entry 51310

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PDB ID: 7v06
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51310
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for differential binding of hnRNP Splicing Auxiliary Factors

Deposition date:

2022-02-06

Original release date:

2022-06-22

Authors:

Chiu, Liang-Yuan; Jain, Niyati; Sugarman, Andrew; Tolbert, Blanton

Citation:

Citation: Chiu, Liang-Yuan; Emery, Ann; Jain, Niyati; Sugarman, Andrew; Kendrick, Nashea; Luo, Le; Ford, William; Swanstrom, Ronald; Tolbert, Blanton. "Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for Differential Binding of hnRNP Splicing Auxiliary Factors" J. Mol. Biol. 434, 167728-167728 (2022).
PubMed: 35870649

Assembly members:

Assembly members:
entity_1, polymer, 43 residues, Formula weight is not available

Natural source:

Natural source: Common Name: HIV-1 Taxonomy ID: 11676 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV-1

Experimental source:

Experimental source: Production method: In vitro transcription Host organism: n/a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GGUGCUGUUUAUCCAUUUCA GAAUUGGGUGUCGACAUAGC ACC

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
1H chemical shifts	137

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 43 residues - Formula weight is not available

1

G

U

G

C

U

G

U

2

A

U

C

A

U

C

A

3

G

A

U

G

U

G

4

U

C

G

A

C

A

U

A

G

C

5

A

C

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_2
2D 1H-13C HMQC	sample_5	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_3	isotropic	sample_conditions_2
2D 1H-15N HNN-COSY	sample_4	isotropic	sample_conditions_2

BMRB Entry 51310

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: