BMRB Entry 5828

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5828

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone and sidechain heteronuclear resonance assignments and hyperfine nuclear magnetic resonance shifts in horse cytochrome c

Deposition date:

2003-06-10

Original release date:

2003-09-28

Authors:

Liu, Weixia; Rumbley, Jon; Englander, S.; Wand, A.

Citation:

Citation: Liu, Weixia; Rumbley, Jon; Englander, S.; Wand, A.. "Backbone and Side-chain Heteronuclear Resonance Assignments and Hyperfine NMR Shifts in Horse Cytochrome c" Protein Sci. 12, 2104-2108 (2003).
PubMed: 12931009

Assembly members:

Assembly members:
Horse cytochrome c, polymer, 104 residues, Formula weight is not available
HEM, non-polymer, 616.487 Da.

Natural source:

Natural source: Common Name: 9796 Taxonomy ID: Horse Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Equus caballus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Horse cytochrome c: GDVEKGKKIFVQKCAQCHTV EKGGKNKTGPNLNGLFGRKT GQAPGFTYTDANKNKGITWK EETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKK ATNE

Data sets:

assigned_chemical_shifts
- cyt_ox_assignments

Data type	Count
1H chemical shifts	536
13C chemical shifts	418
15N chemical shifts	97

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	cytochrome c	1
2	heme	2

Entities:

Entity 1, cytochrome c 104 residues - Formula weight is not available

1

GLY

ASP

VAL

GLU

LYS

GLY

LYS

ILE

PHE

2

VAL

GLN

LYS

CYS

ALA

GLN

CYS

HIS

THR

VAL

3

GLU

LYS

GLY

LYS

ASN

LYS

THR

GLY

PRO

4

ASN

LEU

ASN

GLY

LEU

PHE

GLY

ARG

LYS

THR

5

GLY

GLN

ALA

PRO

GLY

PHE

THR

TYR

THR

ASP

6

ALA

ASN

LYS

ASN

LYS

GLY

ILE

THR

TRP

LYS

7

GLU

THR

LEU

MET

GLU

TYR

LEU

GLU

ASN

8

PRO

LYS

TYR

ILE

PRO

GLY

THR

LYS

MET

9

ILE

PHE

ALA

GLY

ILE

LYS

THR

GLU

10

ARG

GLU

ASP

LEU

ILE

ALA

TYR

LEU

LYS

11

ALA

THR

ASN

GLU

Entity 2, heme - C34 H32 Fe N4 O4 - 616.487 Da.

1

HEM

Samples:

sample_1: Horse cytochrome c, [U-15N; U-13C], 1.0 mM

sample_cond_1: pH: 5.8; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D CBCA(CO)NH	sample_1	not available	sample_cond_1
3D HNCACB	sample_1	not available	sample_cond_1
3D HNCO	sample_1	not available	sample_cond_1
3D (H)CC(CO)NH_TOCSY	sample_1	not available	sample_cond_1
3D H(CC)(CO)NH_TOCSY	sample_1	not available	sample_cond_1

Software:

FELIX v98 -

NMR spectrometers:

Varian INOVA 750 MHz

PRF	610169A
SWISS-PROT	P00004
PDB	2GIW 2PCB 1WEJ 2FRC 1OCD 1U75 1LC2 1M60 1I5T 1LC1 1GIW 1HRC 1FI7 1FI9 1AKK 1CRC
BMRB	5829 5830 5660 5827 5026 5372 4809 4810 4805 4808 274 4189 243 244