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Biological Magnetic Resonance Data BankA Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules |
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Entry ID | Data summary | Entry Title | Citation Title | Authors |
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51379 | Chemical Shifts: 1 set |
1H, 13C, and 15N resonance assignments of human glutathione peroxidase 4 |
1H, 13C, and 15N resonance assignments of human glutathione peroxidase 4
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Chojiro Kojima, Kouki Inomata, Kyoko Furuita, Naohiro Kobayashi, Toshihiko Sugiki, Toshimichi Fujiwara |
36339 | Chemical Shifts: 1 set |
Solution NMR structure of fold-U Nomur; de novo designed protein with an asymmetric all-alpha topology |
Design of complicated all-alpha protein structures
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Kano Suzuki, Koya Sakuma, Naohiro Kobayashi, Naoya Kobayashi, Nobuyasu Koga, Rie Tatsumi-Koga, Takahiro Kosugi, Takeshi Murata, Toshihiko Sugiki, Toshimichi Fujiwara, Toshio Nagashima |
36335 | Chemical Shifts: 1 set |
Solution NMR structure of fold-0 Chantal; de novo designed protein with an asymmetric all-alpha topology |
Design of complicated all-alpha protein structures
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Kano Suzuki, Koya Sakuma, Naohiro Kobayashi, Naoya Kobayashi, Nobuyasu Koga, Rie Tatsumi-Koga, Takahiro Kosugi, Takeshi Murata, Toshihiko Sugiki, Toshimichi Fujiwara, Toshio Nagashima |
36336 | Chemical Shifts: 1 set |
Solution NMR structure of fold-C Rei; de novo designed protein with an asymmetric all-alpha topology |
Design of complicated all-alpha protein structures
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Kano Suzuki, Koya Sakuma, Naohiro Kobayashi, Naoya Kobayashi, Nobuyasu Koga, Rie Tatsumi-Koga, Takahiro Kosugi, Takeshi Murata, Toshihiko Sugiki, Toshimichi Fujiwara, Toshio Nagashima |
36337 | Chemical Shifts: 1 set |
Solution NMR structure of fold-Z Gogy; de novo designed protein with an asymmetric all-alpha topology |
Design of complicated all-alpha protein structures
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Kano Suzuki, Koya Sakuma, Naohiro Kobayashi, Naoya Kobayashi, Nobuyasu Koga, Rie Tatsumi-Koga, Takahiro Kosugi, Takeshi Murata, Toshihiko Sugiki, Toshimichi Fujiwara, Toshio Nagashima |
36338 | Chemical Shifts: 1 set |
Solution NMR structure of fold-K Mussoc; de novo designed protein with an asymmetric all-alpha topology |
Design of complicated all-alpha protein structures
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Kano Suzuki, Koya Sakuma, Naohiro Kobayashi, Naoya Kobayashi, Nobuyasu Koga, Rie Tatsumi-Koga, Takahiro Kosugi, Takeshi Murata, Toshihiko Sugiki, Toshimichi Fujiwara, Toshio Nagashima |
36334 | Chemical Shifts: 1 set |
Solution NMR structure of NF3; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S Minami, T Fujiwara, T Nagashima, T Sugiki |
36331 | Chemical Shifts: 1 set |
Solution NMR structure of NF6; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Koga, R Koga, S Minami, T Fujiwara, T Kobayashi, T Nagashima, T Sugiki |
36332 | Chemical Shifts: 1 set |
Solution NMR structure of NF4; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S Minami, T Fujiwara, T Nagashima, T Sugiki |
36333 | Chemical Shifts: 1 set |
Solution NMR structure of NF8 (knot fold); de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S Minami, T Fujiwara, T Nagashima, T Sugiki |
36330 | Chemical Shifts: 1 set |
Solution NMR structure of NF5; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S Minami, T Fujiwara, T Nagashima, T Sugiki |
36328 | Chemical Shifts: 1 set |
Solution NMR structure of NF2; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S Minami, T Fujiwara, T Nagashima, T Sugiki |
36327 | Chemical Shifts: 1 set Spectral_peak_list: 10 sets |
Solution NMR structure of NF1; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S Minami, T Fujiwara, T Nagashima, T Sugiki |
36329 | Chemical Shifts: 1 set |
Solution NMR structure of NF7; de novo designed protein with a novel fold |
Exploration of novel alpha-beta protein folds through de novo design
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G Chikenji, N Kobayashi, N Koga, R Koga, S MInami, T Fujiwara, T Nagashima, T Sugiki |
12019 | Chemical Shifts: 1 set |
Solid-state NMR C-13 and N-15 chemical shifts of the chitin binding domain of chitinase A1 from Bacillus circulans WL-12 |
A novel chitin-binding mode of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12 revealed by solid-state NMR.
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Hayuki Sugimoto, Hideo Akutsu, Hiroki Tanaka, Izumi Yabuta, Masashi Hara, Takahisa Ikegami, Takeshi Watanabe, Toshimichi Fujiwara |
27232 | Chemical Shifts: 1 set |
13C chemical shifts of solid-state NMR signals of subunit c-ring of TFoF1 ATP synthase |
Direct assignment of 13C solid-state NMR signals of TFoF1 ATP synthase subunit c-ring in lipid membranes and its implication for the ring structure
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Hideo Akutsu, Masasuke Yoshida, Su-Jin J Kang, Suyeon Bak, Toshiharu Suzuki, Toshimichi Fujiwara, Yasuto Todokoro |
36009 | Chemical Shifts: 1 set |
Solution NMR structure of Humanin containing a D-isomerized serine residue |
Solution NMR structure and inhibitory effect against amyloid-beta fibrillation of Humanin containing a d-isomerized serine residue
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C Kojima, K Furuita, M So, N Alsanousi, T Fujiwara, T Sugiki, Y H Lee |
30076 | Chemical Shifts: 1 set |
Domain 4 Segment 6 of voltage-gated sodium channel Nav1.4 |
Veratridine binding to a transmembrane helix of sodium channel Na
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Ai Niitsu, Ayako Egawa, Kazuo Tachibana, Keisuke Ikeda, Toshimichi Fujiwara |
26047 | Chemical Shifts: 1 set |
Lysine dimethylated FKBP12 |
NMR Observation of Protein Surface Salt Bridges at Neutral pH
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Chojiro Kojima, Izuru Ohki, Jukab Sebera, Kyoko Furuita, Naohiro Kobayashi, Takahisa Ikegami, Toshihiko Sugiki, Toshimichi Fujiwara, Vladimir Sychrovsky, Yoshikazu Hattori, Yoshiyuki Tanaka |
25636 | Chemical Shifts: 1 set Heteronuclear NOE Values: 1 set T1 Relaxation Values: 1 set T2 Relaxation Values: 1 set |
Solution structure of AVR-Pia |
Solution structure of an avirulence protein, AVR-Pia, from Magnaporthe oryzae
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Azusa Oikawa, Katsumi Maenaka, Makoto Demura, Masakatsu Kamiya, Shiho Fujiwara, Teruo Sone, Toyoyuki Ose, Yukiko Nakamura, Yuki Satoh, Yuya Higuchi |
11550 | Chemical Shifts: 1 set Spectral_peak_list: 4 sets |
Active-Site Structure of the Thermophilic Foc-Subunit Ring in Membranes Elucidated by Solid-State NMR |
Active-site structure of the thermophilic foc-subunit ring in membranes elucidated by solid-state NMR
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Fujiwara Toshimichi, Hideo Akutsu, Iwasaki Iku, Miyagi Atsushi, Shen Bo, Su-Jin Kang, Suzuki Toshiharu, Todokoro Yasuto, Yoshida Masasuke, Yumen Ikuko |
11546 | Chemical Shifts: 1 set |
1H, 15N and 13C resonance assignments of the conserved domain in the middle of Schizosaccharomyces pombe SAPK-interacting protein 1 |
Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints
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Chojiro Kojima, Kazuhiro Shiozaki, Kyoko Furuita, Naohiro Kobayashi, Saori Kataoka, Takahisa Ikegami, Toshimichi Fujiwara, Yoshikazu Hattori |
11523 | Chemical Shifts: 1 set |
Solution structure of the second RRM domain of Nrd1 |
Structure of the second RRM domain of Nrd1, a fission yeast MAPK target RNA binding protein, and implication for its RNA recognition and regulation
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Ayaho Kobayashi, Masaki Mishima, Reiko Sugiura, Ryosuke Satoh, Teppei Kanaba, Toshinobu Fujiwara, Yutaka Ito |
11512 | Chemical Shifts: 1 set |
Backbone 13C Chemical Shift Assignments for Ubiquitin in Lyophilized Powder |
Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database
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Ayako Egawa, Keisuke Ikeda, Toshimichi Fujiwara |
11489 | Chemical Shifts: 1 set |
RNA aptamer against prion protein in complex with the partial binding peptide |
Anti-prion activity of an RNA aptamer and its structural basis
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Fumiko Nishikawa, Hiromichi Fujiwara, Kazuo Kuwata, Masato Katahira, Masayuki Saimura, Satoshi Nishikawa, Takashi Nagata, Tsukasa Mashima, Tsutomu Kodaki, Yuji O Kamatari |
11250 | Chemical Shifts: 1 set |
Structure and function of the N-terminal nucleolin binding domain of nuclear valocine containing protein like 2 (NVL2) harboring a nucleolar localization signal. |
Structure and Function of the N-terminal Nucleolin Binding Domain of Nuclear Valosin-containing Protein-like 2 (NVL2) Harboring a Nucleolar Localization Signal.
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Hidekazu Hiroaki, Ken-Ichiro Fujiwara, Masahiro Shirakawa, Naoko Iwaya, Natsuko Goda, Takeshi Tenno, Yoshie Fujiwara |
11176 | Chemical Shifts: 1 set |
Solution Structure of RNA aptamer against AML1 Runt domain |
A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
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Gota Kawai, Hiroaki Iibuchi, Jun-ichi Fukunaga, Kazuya Fujiwara, Manabu Chiba, Taiichi Sakamoto, Taku Tanaka, Tomoko Kozu, Yoichiro Tanaka, Yoshikazu Nakamura, Yusuke Nomura |
11172 | Chemical Shifts: 1 set |
13C and 15N chemical shifts of the membrane-reconstituted subunit c-ring of E. coli H+-ATP synthase |
Structural analysis of the membrane-reconstituted subunit c-ring of E. coli H+-ATP synthase by solid-state NMR
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Hideo Akutsu, Ikuko Yumen, Masatoshi Kobayashi, Saburo Aimoto, Takeshi Sato, Toru Kawakami, Toshimichi Fujiwara, Yasuto Todokoro |
11075 | Chemical Shifts: 1 set |
1H, 13C, and 15N Chemical Shift Assignments for N-terminal domain of kp60 |
A common substrate recognition mode conserved between katanin p60 and VPS4 governs microtubule severing and membrane skeleton reorganization.
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Hidehito Tochio, Hidekazu Hiroaki, Kohei Akiyama, Masahiro Shirakawa, Naoko Iwaya, Natsuko Goda, Shogo Mase, Takahisa Ikegami, Takeshi Tenno, Yohta Kuwahara, Yoshie Fujiwara |
11058 | Chemical Shifts: 1 set |
Chemical shift assignment of PACAP21 bound to phospholipid membranes by magic angle spinning solid-state NMR |
Structural analysis of pituitary adenylate cyclase-activating polypeptides bound to phospholipid membranes by magic angle spinning solid-state NMR.
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Hideo Akutsu, Kayo Okawa, Masahiro Shirakawa, Nobuyasu Komi, Toshimichi Fujiwara, Yukihiro Tateishi |
11059 | Chemical Shifts: 1 set |
Chemical shift assignment of PACAP27 bound to phospholipid membranes by magic angle spinning solid-state NMR |
Structural analysis of pituitary adenylate cyclase-activating polypeptides bound to phospholipid membranes by magic angle spinning solid-state NMR.
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Hideo Akutsu, Kayo Okawa, Masahiro Shirakawa, Nobuyasu Komi, Toshimichi Fujiwara, Yukihiro Tateishi |
10022 | Chemical Shifts: 1 set |
3D Structure of amyloid protofibrils of beta2-microglobulin fragment probed by solid-state NMR |
3D Structure of amyloid protofibrils of beta2-microglobulin fragment probed by solid-state NMR
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Hideo Akutsu, Hironobu Naiki, Kentaro Iwata, Satoshi Takahashi, Toshimichi Fujiwara, Yoh Matsuki, Yuji Goto |
10021 | Chemical Shifts: 1 set |
Backbone and sidechain 13C and 15N Chemical Shift Assignments of H+-ATP synthase subunit c in the solid state |
13C and 15N chemical shift assignment of H+-ATP synthase subunit c in the solid state
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Hideo Akutsu, Ikuko Yumen, Masatoshi Kobayashi, Toshimichi Fujiwara, Yoh Matsuki |
10001 | Chemical Shifts: 1 set |
A high resolution structure of mastoparan-X strongly bound to lipid-bilayer membrane determined by solid-state NMR |
Structure of Tightly Membrane-Bound Mastoparan-X, a G-protein-Activating Peptide, Determined by Solid-State NMR
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Hideo Akutsu, Ikuko Yumen, J-S Park, Kaori Wakamatsu, Kei Fukushima, S-W Kang, Toshimichi Fujiwara, Toshiyuki Kohno, Yasuto Todokoro |
6214 | Chemical Shifts: 1 set |
Signal assignments and chemical-shift structural analysis of uniformly 13C, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning |
Signal assignments and chemical-shift structural analysis of uniformly 13C, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning
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Akutsu Hideo, Kohno Toshiyuki, Tawarayama Midori, Toshimichi Fujiwara, Wakamatsu Kaori, Yanagishita Hajime, Yasuto Todokoro |
5333 | Chemical Shifts: 5 sets |
Redox-Coupled Conformational Alternations in Cytochrome c3 from D. vulgaris Miyazaki F on the Basis of its Reduced Solution Structure |
Redox-coupled Conformational Alternations in Cytochrome c3 from D. vulgaris Miyazaki F on the Basis of its Reduced Solution Structure
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Arima Fukunishi, Erisa Harada, Gota Kawai, Hideo Akutsu, Tomoaki Ohmura, Toshimichi Fujiwara, Yuki Fukuoka |