Biological Magnetic Resonance Data BankA Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules |
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Entry ID | Data summary | Entry Title | Citation Title | Authors |
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31106 | Chemical Shifts: 2 sets |
The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state | An RNA excited conformational state at atomic resolution | A Geng, D A Case, H M Al-Hashimi, H Shi, L Ganser, R Roy, S Pratihar |
31099 | Chemical Shifts: 1 set |
FARFAR-NMR ensemble of HIV-1 TAR with apical loop capturing ground and excited conformational states | Kinetic Resolution of the Atomic 3D Structures Formed by Ground and Excited Conformational States in an RNA Dynamic Ensemble | A Geng, D K Merriman, E A Dethoff, H M Al-Hashimi, H Shi, L Salmon, R Roy |
30942 | Chemical Shifts: 1 set |
An RNA aptamer that decreases flavin redox potential | An RNA aptamer that shifts the reduction potential of metabolic cofactors | Dana A Baum, Donald H Burke, Johan A Carballo, John S Samuelian, Jun Li, Manami Roychowdhury-Saha, Raghav R Poudyal, Seth A Staller, Shi-Jie Chen, Thomas J Gremminger, Xiao Heng, Yuanzhe Zhou, Zhenwei Song |
30788 | Chemical Shifts: 1 set |
The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20) | Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction | A Rangadurai, D A Case, D Herschlag, H Abou-Assi, H M Al-Hashimi, H Shi, J D Yesselman, R Roy |
30517 | Chemical Shifts: 1 set |
Solution NMR structure of the KCNQ1 voltage-sensing domain | Structure and physiological function of the human KCNQ1 channel voltage sensor intermediate state | A L George, C R Sanders, D Peng, G Kuenze, H Huang, J A Smith, J Cui, J Meiler, J Shi, K C Taylor, K M White, N Yang, P Hou, P W Kang, R L McFeeters |
30501 | Chemical Shifts: 1 set |
Solution structure of ZZZ3 ZZ domain in complex with histone H3 tail | The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation. | Adam H Tencer, Danni Peng, Hong Wen, Jie Lyu, Qiong Tong, Tatiana G Kutateladze, Wei Li, Wenyi Mi, Xiaobing Shi, Xiaolu Wang, Yi Zhang, Yongming Xue |
30502 | Chemical Shifts: 1 set |
Solution structure of ZZZ3 ZZ domain in complex with histone H3K4ac peptide | The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation. | Adam H Tencer, Danni Peng, Hong Wen, Jie Lyu, Qiong Tong, Tatiana G Kutateladze, Wei Li, Wenyi Mi, Xiaobing Shi, Xiaolu Wang, Yi Zhang, Yongming Xue |
30413 | Chemical Shifts: 1 set |
JzTx-V toxin peptide, wild-type | Pharmacological characterization of potent and selective NaV1.7 inhibitors engineered from Chilobrachys jingzhao tarantula venom peptide JzTx-V. | A Zou, B D Moyer, B Wu, D Liu, J B Jordan, J H Lee, J K Murray, J Ligutti, J Long, K Andrews, K Biswas, K Sham, L P Miranda, L Shi, P Favreau, R Stocklin, R Yin, V Yu |
30411 | Chemical Shifts: 1 set Spectral_peak_list: 1 set |
Solution NMR structure of JzTx-V, a Nav 1.7 inhibitory peptide | Pharmacological characterization of potent and selective NaV1.7 inhibitors engineered from Chilobrachys jingzhao tarantula venom peptide JzTx-V. | A Zou, B D Moyer, B Wu, D Liu, J B Jordan, J H Lee, J K Murray, J Ligutti, J Long, K Andrews, K Biswas, K Sham, L Miranda, L Shi, P Favreau, R Stocklin, R Yin, V Yu |
36117 | Chemical Shifts: 1 set |
SOLUTION STRUCTURE OF HUMAN MOG1 | Mitosis-specific acetylation tunes Ran effector binding for chromosome segregation | H Liu, J Wu, J Zhang, K Ruan, Q Gong, Q Hu, R Tian, S Akram, W Wang, X Bao, X Liu, X Yao, X Yuan, Y Liu, Y Shi, Y Zhang, Z Dou, Z Zhang |
30254 | Chemical Shifts: 1 set Spectral_peak_list: 1 set |
Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure | Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A | A Rangadurai, B Sathyamoorthy, D K Merriman, H M Al-Hashimi, H Shi, H Zhou, Y Xue |
30255 | Chemical Shifts: 1 set Spectral_peak_list: 1 set |
Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure | Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A | A Rangadurai, B Sathyamoorthy, D K Merriman, H M Al-Hashimi, H Shi, H Zhou, Y Xue |
30253 | Chemical Shifts: 1 set Spectral_peak_list: 1 set |
Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure | Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A | A Rangadurai, B Sathyamoorthy, D K Merriman, H M Al-Hashimi, H Shi, H Zhou, Y Xue |
19235 | Chemical Shifts: 1 set |
Solution structure of the Aha1 dimer from Colwellia psychrerythraea | Discriminating the Symmetric Dimer Interface of the 33kDa Aha1 Domain by combining NMR and SAXS data in a hybrid method | Christopher M Barbieri, David Baker, Edward H Snell, Gaetano T Montelione, Gaohua Liu, Hsiau-Wei Lee, Joseph R Luft, Lei Shi, Nikolaos G Sgourakis, Oliver A Lange, Paolo Rossi, Rong Xiao, Thomas B Acton, Thomas D Grant |
19111 | Chemical Shifts: 1 set |
USP25 | (1)H, (13)C and (15)N backbone and side-chain resonance assignments of the N-terminal ubiquitin-binding domains of USP25. | Li Shi, Naixia Zhang, Yi Wen |
19080 | Chemical Shifts: 2 sets |
Backbone assignment of an unlinked NS2B and NS3 protease complex of dengue virus 2 | NMR Analysis of a Novel Enzymatically Active Unlinked Dengue NS2B-NS3 Protease Complex. | Alvin W Hung, Andy Yip, Angela Shuyi Chen, Cheng San Brian Chia, Christian G Noble, Congbao Kang, Huichang Annie Lim, Jeffrey Hill, John Liang Kuan Wee, Joma Joy, Le Tian Lee, Melgious Jin Yan Ang, Pei-Yong Shi, Qing-Yin Wang, Qiwei Huang, Rong Li, Shovanlal Gayen, Thomas H Keller, Young Mee Kim |
18546 | Chemical Shifts: 1 set |
Solution structure of the tandem zinc finger domain of fission yeast Stc1 | Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification. | Chao He, Elizabeth H Bayne, Francesca Taglini, Fudong Li, Jiahai Zhang, Jihui Wu, Ke Ruan, Sreerekha S Pillai, Yunyu Shi |
17890 | Chemical Shifts: 1 set |
NMR structure of the lectin CCL2 (free) | Plasticity of the beta-Trefoil Protein Fold in the Recognition and Control of Invertebrate Predators and Parasites by a Fungal Defence System | Alex Butschi, Frederic H-T Allain, Iain BH Wilson, Katrin Stutz, Mario Schubert, Markus Aebi, Markus Kunzler, Martin A Walti, Michael O Hengartner, Pascal Egloff, Shi Yan, Silvia Bleuler-Martinez |
15562 | Chemical Shifts: 1 set Coupling Constants: 1 set Heteronuclear NOE Values: 2 sets T1 Relaxation Values: 2 sets T2 Relaxation Values: 2 sets Order Parameters: 1 set Residual Dipolar Couplings: 2 sets |
Solution Structure of S. cerevisiae PDCD5-like Protein Ymr074cp | Solution structure of S. cerevisiae PDCD5-like protein and its promoting role in H(2)O(2)-induced apoptosis in yeast. | Jiahai Zhang, Jihui Wu, Jingjun Hong, Su Qin, Yunyu Shi, Zhijun Liu |
15377 | Chemical Shifts: 1 set |
Solution structure of human DESR1 | Solution structure of human DESR1, a CSL zinc-binding protein. | Fangming Wu, F Yang, H Huang, J Sun, J Wu, J Zhang, M Yu, P Ji, W Chu, Y Shi, Z Wu |
15150 | Chemical Shifts: 1 set |
Solution Structure and Binding Property of the Domain-swapped Dimer of ZO2PDZ2 | Domain-swapped dimerization of the second PDZ domain of ZO2 may provide a structural basis for the polymerization of claudins | D Xie, G Zhang, H Huang, J H Wu, J H Zhang, J W Wu, M Wu, P Ji, P Jiang, W Du, Y S Yang, Y Y Shi |
15057 | Chemical Shifts: 1 set |
Solution Structrue of C-terminal Bromodomain of Brd4 | Structural basis and binding properties of the second bromodomain of Brd4 with acetylated histone tails | B Ding, H Huang, J Wu, J Zhang, X Wang, Y Liu, Y Shi |
6473 | Chemical Shifts: 1 set |
Structural and dynamic characteristics of the acid-unfolded state of hUBF HMG Box 1 provide clues for the early events in protien folding | Compact molten globule-like state of hUBF HMG Box1 at extremely low pH | H Huang, Jiahai Zhang, Jihui Wu, J Xu, Q Chen, X Li, Xuecheng Zhang, Yunyu Shi |
6152 | Chemical Shifts: 1 set |
Solution structure of TIP-B1 | Solution structure of recombinant TIP-B1, a novel TNF inhibitory protein | C Xu, J H Wu, P C Zheng, Q H Zhang, Y J Tang, Y Q Xu, Y Y Shi, Y Z Du |
5799 | Chemical Shifts: 1 set |
Protein Signal Assignments using Specific Labeling and Cell-free Synthesis | Protein Signal Assignments using Specific Labeling and Cell-free Synthesis | D E Wemmer, H S Cho, Jefferey G Pelton, Jianxia Shi |
4585 | Chemical Shifts: 1 set |
Solution Structure of BmP02, a new Potassium channel Blocker from the Venom of the Chinese Scorpion Buthus martensi Karsch | Solution Structure of BmP02, a new Potassium channel Blocker from the Venom of the Chinese Scorpion Buthus martensi Karsch | J H Wu, J M Pei, Q C Tong, Y H Ji, Y Q Xu, Y Y Shi |