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Biological Magnetic Resonance Data BankA Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules |
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Entry ID | Data summary | Entry Title | Citation Title | Authors |
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51071 | Chemical Shifts: 1 set |
NMR-driven structure of KRAS4B-G12D-GTP homodimer on a lipid bilayer nanodisc |
Oncogenic KRAS G12D mutation promotes dimerization through a second, phosphatidylserine-dependent interface: a model for KRAS oligomerization
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Christopher Marshall, Genevieve Gasmi-Seabrook, Ki-Young Lee, Masahiro Enomoto, Mitsuhiko Ikura, Teklab Gebregiworgis |
27983 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N chemical shift assignments for C. elegans STIM EF-SAM (form 2) in the absence of calcium. |
Coordination of a single calcium ion in the EF-hand maintains the off state of the stromal interaction molecule luminal domain
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Le Zheng, Masahiro Enomoto, Mitsuhiko Ikura, Noboru Ishiyama, Peter B Stathopulos, Sung-In Back, Tadateru Nishikawa |
27982 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N chemical shift assignments for C. elegans STIM EF-SAM (form 1) in the absence of calcium. |
Coordination of a single calcium ion in the EF-hand maintains the off state of the stromal interaction molecule luminal domain
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Le Zheng, Masahiro Enomoto, Mitsuhiko Ikura, Noboru Ishiyama, Peter B Stathopulos, Sung-In Back, Tadateru Nishikawa |
27981 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N chemical shift assignments for C. elegans STIM EF-SAM in the presence of calcium. |
Coordination of a single calcium ion in the EF-hand maintains the off state of the stromal interaction molecule luminal domain
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Le Zheng, Masahiro Enomoto, Mitsuhiko Ikura, Noboru Ishiyama, Peter B Stathopulos, Sung-In Back, Tadateru Nishikawa |
30639 | Chemical Shifts: 1 set |
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A) |
Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane
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Christopher B Marshall, Genevieve Gasmi-Seabrook, Ki-Young Y Lee, Ku-Geng G Huo, Le Zheng, Ming-Sound S Tsao, Mitsuhiko Ikura, Nadeem Moghal, Zhenhao Fang |
30640 | Chemical Shifts: 1 set |
NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B) |
Multivalent assembly of KRAS with the RAS-binding and cysteine-rich domains of CRAF on the membrane
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Christopher B Marshall, Genevieve Gasmi-Seabrook, Ki-Young Y Lee, Ku-Geng G Huo, Le Zheng, Ming-Sound S Tsao, Mitsuhiko Ikura, Nadeem Moghal, Zhenhao Fang |
27526 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for alpha-N catenin actin-binding domain H1 mutant |
Force-dependent allostery of the alpha-catenin actin-binding domain controls adherens junction dynamics and functions
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Alex Yemelyanov, Anna B Kobb, Annette S Flozak, Cara J Gottardi, Deborah E Leckband, Hanako Hayashi, Megan N Wood, Mitsuhiko Ikura, Noboru Ishiyama, Ritu Sarpal, Rodrigo Fernandez-Gonzalez, Samantha K Barrick, Shigenobu Yonemura, Tadateru Nishikawa, Ulrich Tepass |
27361 | Chemical Shifts: 1 set T1 Relaxation Values: 1 set |
Stromal Interaction Molecule 1 CC1 R304W mutant |
A novel mechanism promotes switching of the Stormorken STIM1 R304W mutant into the activated state
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Christoph Romanin, Marc Fahrner, Martin Muik, Michael Stadlbauer, Mitsuhiko Ikura, Norbert Mueller, Peter Stathopulos, Petr Rathner |
27360 | Chemical Shifts: 1 set T1 Relaxation Values: 1 set |
Stromal Interaction Molecule 1, Homo Sapiens, WT |
A novel mechanism promotes switching of the Stormorken STIM1 R304W mutant into the activated state
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Christoph Romanin, Marc Fahrner, Martin Muik, Michael Stadlbauer, Mitsuhiko Ikura, Norbert Mueller, Peter Stathopulos, Petr Rathner |
26864 | Chemical Shifts: 1 set |
ScribPDZ4withp22phoxC10 |
An interaction between Scribble and the NADPH oxidase complex controls M1 macrophage polarization and function
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Charles W Tran, Ishaan Jagan, Kiyomi Araki, Masataka Umitsu, Michael BeGora, Mitsuhiko Ikura, Noboru Ishiyama, Pamela S Ohashi, Senthil K Muthuswamy, Weiyue Zheng |
26863 | Chemical Shifts: 1 set |
ScribPDZ4apo |
An interaction between Scribble and the NADPH oxidase complex controls M1 macrophage polarization and function
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Charles W Tran, Ishaan Jagan, Kiyomi Araki, Masataka Umitsu, Michael BeGora, Mitsuhiko Ikura, Noboru Ishiyama, Pamela S Ohashi, Senthil K Muthuswamy, Weiyue Zheng |
26833 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for alpha-N Catenin C-terminal domain |
Backbone resonance assignments of the F-actin binding domain of mouse alpha N-catenin
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Feng Wang, Mitsuhiko Ikura, Noboru Ishiyama, Tadateru Nishikawa |
26787 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for human RIT1 |
Biochemical Classification of Disease-associated Mutants of RAS-like Protein Expressed in Many Tissues (RIT1)
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Benjamin G Neel, Christopher B Marshall, Genevieve MC Gasmi-Seabrook, Jiani C Yin, Matthew J Smith, Mitsuhiko Ikura, Mohammad T Mazhab-Jafari, Yang Xu, Zhenhao Fang |
25115 | Chemical Shifts: 1 set |
NMR data-driven model of GTPase KRas-GNP tethered to a lipid-bilayer nanodisc |
Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site
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Benjamin G Neel, Christopher B Marshall, Fuyuhiko Inagaki, Genevieve M C Gasmi-Seabrook, Lewis E Kay, Matthew J Smith, Mitsuhiko Ikura, Mohammad T Mazhab-Jafari, Peter B Stathopoulos |
25116 | Chemical Shifts: 1 set |
NMR data-driven model of GTPase KRas-GNP:ARafRBD complex tethered to a lipid-bilayer nanodisc |
Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site
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Benjamin G Neel, Christopher B Marshall, Fuyuhiko Inagaki, Genevieve M C Gasmi-Seabrook, Lewis E Kay, Matthew J Smith, Mitsuhiko Ikura, Mohammad T Mazhab-Jafari, Peter B Stathopoulos |
25114 | Chemical Shifts: 1 set |
NMR data-driven model of GTPase KRas-GDP tethered to a lipid-bilayer nanodisc |
Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site
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Benjamin G Neel, Christopher B Marshall, Fuyuhiko Inagaki, Genevieve M C Gasmi-Seabrook, Lewis E Kay, Matthew J Smith, Mitsuhiko Ikura, Mohammad T Mazhab-Jafari, Peter B Stathopoulos |
19425 | Chemical Shifts: 1 set |
X-ray crystallography-solution NMR hybrid structure of mouse RyR2 domain A. |
Type 2 Ryanodine Receptor Domain A Contains a Unique and Dynamic -Helix That Transitions to a -Strand in a Mutant Linked with a Heritable Cardiomyopathy.
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David H Maclennan, Fernando J Amador, Filip Van Petegem, Genevieve MC Gasmi-Seabrook, Lynn Kimlicka, Mitsuhiko Ikura, Peter B Stathopulos |
19424 | Chemical Shifts: 1 set |
Backbone chemical shift assignments of delta exon 3 mouse RyR2 domain A |
Type 2 ryanodine receptor domain A contains a unique and dynamic -helix that transitions to a -strand in a mutant linked with a heritable cardiomyopathy.
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David H Maclennan, Fernando J Amador, Filip Van Petegem, Genevieve MC Gasmi-Seabrook, Lynn Kimlicka, Mitsuhiko Ikura, Peter B Stathopulos |
19362 | Chemical Shifts: 2 sets |
Solution Structure of the STIM1 CC1-CC2 homodimer. |
STIM1/Orai1 coiled-coil interplay in the regulation of store-operated calcium entry
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Christoph Romanin, Genevieve Gasmi-Seabrook, Le Zheng, Marc Fahrner, Martin Muik, Mitsuhiko Ikura, Peter B Stathopulos, Rainer Schindl |
19363 | Chemical Shifts: 2 sets |
Solution structure of the STIM1 CC1-CC2 homodimer in complex with two Orai1 C-terminal domains. |
STIM1/Orai1 coiled-coil interplay in the regulation of store-operated calcium entry
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Christoph Romanin, Genevieve Gasmi-Seabrook, Le Zheng, Marc Fahrner, Martin Muik, Mitsuhiko Ikura, Peter B Stathopulos, Rainer Schindl |
18315 | Chemical Shifts: 1 set |
NMR structure of FOXO3a transactivation domains (CR2C-CR3) in complex with CBP KIX domain (2l3b conformation) |
Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.
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Christopher B Marshall, Feng Wang, Genevieve MC Gasmi-Seabrook, Guang-Yao Li, Hitoshi Okada, Kazuo Yamamoto, Mitsuhiko Ikura, Tak W Mak |
18314 | Chemical Shifts: 1 set |
NMR structure of FOXO3a transactivation domains (CR2C-CR3) in complex with CBP KIX domain (2b3l conformation) |
Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.
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Christopher B Marshall, Feng Wang, Genevieve MC Gasmi-Seabrook, Guang-Yao Li, Hitoshi Okada, Kazuo Yamamoto, Mitsuhiko Ikura, Tak W Mak |
17289 | Chemical Shifts: 1 set |
NMR structure of calcium-loaded STIM2 EF-SAM. |
Auto-inhibitory role of the EF-SAM domain of STIM proteins in store-operated calcium entry.
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Christoph Romanin, Guang-Yao Li, Le Zheng, Mitsuhiko Ikura, Peter B Stathopulos, Rainer Schindl |
17162 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for a photochromic fluorescent protein Dronpa in the bright state |
Molecular basis of photochromism of a fluorescent protein revealed by direct (13)C detection under laser illumination.
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Atsushi Miyawaki, Hideaki Mizuno, Markus Walchli, Mitsuhiko Ikura, Takashi Fukano, Tapas Kumar Mal |
17163 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for a photochromic fluorescent protein Dronpa in the dark state |
Molecular basis of photochromism of a fluorescent protein revealed by direct (13)C detection under laser illumination.
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Atsushi Miyawaki, Hideaki Mizuno, Markus Walchli, Mitsuhiko Ikura, Takashi Fukano, Tapas Kumar Mal |
16744 | Chemical Shifts: 1 set |
Structure and identification of ADP-ribose recognition motifs of APLF and role in the DNA damage response |
Structure and identification of ADP-ribose recognition motifs of APLF and role in the DNA damage response.
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Amanda L Fenton, C Anne Koch, Guang-Yao Li, Li Meng, Melissa Cheung, Mitsuhiko Ikura, Richard D McCulloch |
16668 | Chemical Shifts: 1 set |
GTPase RhoA-GDP |
Real-time NMR study of guanine nucleotide exchange and activation of RhoA by PDZ-RhoGEF.
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Bryan Kim, Christopher B Marshall, Feng Wang, Genevieve MC Gasmi-Seabrook, Melissa Cheung, Mitsuhiko Ikura, Tak W Mak, Vuk Stambolic, Ying Ju Jang |
16669 | Chemical Shifts: 1 set Spectral_peak_list: 1 set |
GTPase RhoA GTPgS |
Real-time NMR study of guanine nucleotide exchange and activation of RhoA by PDZ-RhoGEF.
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Bryan Kim, Christopher B Marshall, Feng Wang, Genevieve MC Gasmi-Seabrook, Melissa Cheung, Mitsuhiko Ikura, Tak W Mak, Vuk Stambolic, Ying Ju Jang |
16471 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for IQGAP1 (401-533) |
The PTB domain of ShcA couples receptor activation to the cytoskeletal regulator IQGAP1.
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Andrei Starostine, Guang-Yao Li, Marilyn Goudreault, Matthew J Smith, Mitsuhiko Ikura, Pavel Metalnikov, Steven Hersch, Tony Pawson, W Rod Hardy |
16470 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for ShcA PTB Domain |
The PTB domain of ShcA couples receptor activation to the cytoskeletal regulator IQGAP1.
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Andrei Starostine, Guang-Yao Li, Marilyn Goudreault, Matthew J Smith, Mitsuhiko Ikura, Pavel Metalnikov, Steven Hersch, Tony Pawson, W Rod Hardy |
16065 | Chemical Shifts: 1 set |
Structure of E. coli toxin RelE(R81A/R83A)mutant in complex with antitoxin RelBc (K47-L79) peptide |
Inhibitory mechanism of E. coli RelE/RelB toxin/antitoxin module involves a helix displacement near a mRNA interferase active site
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Guang-Yao Li, Masayori Inouye, Mitsuhiko Ikura, Yonglong Zhang |
16067 | Chemical Shifts: 1 set |
Backbone assignment of RelB antitoxin C-terminal peptide (RelBc) in the RelE-free state |
Inhibitory mechanism of E. coli RelE/RelB toxin/antitoxin module involves a helix displacement near a mRNA interferase active site
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Guang-Yao Li, Masayori Inouye, Mitsuhiko Ikura, Yonglong Zhang |
16066 | Chemical Shifts: 1 set |
Structure of E. coli toxin RelE(R81A/R83A) mutant in the free state |
Inhibitory mechanism of E. coli RelE/RelB toxin/antitoxin module involves a helix displacement near a mRNA interferase active site
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Guang-Yao Li, Masayori Inouye, Mitsuhiko Ikura, Yonglong Zhang |
15939 | Chemical Shifts: 1 set |
Solution Structure of FOXO3a Forkhead domain |
Biochemical and structural characterization of an intramolecular interaction in FOXO3a and its binding with p53
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Christopher B Marshall, Feng Wang, Guang-Yao Li, Han You, Kazuo Yamamoto, Michael J Plevin, Mitsuhiko Ikura, Tak W Mak |
15851 | Chemical Shifts: 1 set |
NMR structure of calcium-loaded STIM1 EF-SAM |
Structural and Mechanistic Insights into STIM1-Mediated Initiation of Store-Operated Calcium Entry
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Guang-Yao Li, Le Zheng, Michael J Plevin, Mitsuhiko Ikura, Peter B Stathopulos |
15691 | Chemical Shifts: 1 set Residual Dipolar Couplings: 1 set |
Structure of the DBD domain of E. coli antitoxin RelB |
Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module
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Guang-Yao Li, Masayori Inouye, Mitsuhiko Ikura, Yonglong Zhang |
6833 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for holo-MazF(E24A) with MazEp(54-77) |
Characterization of Dual Substrate Binding Sites in the Homodimeric Structure of Escherichia coli mRNA Interferase MazF
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Guang-Yao Li, Klaus P Hoeflich, Masayori Inouye, Mitchell C Chan, Mitsuhiko Ikura, Tapas K Mal, Yonglong Zhang |
6828 | Chemical Shifts: 1 set |
Backbone 1H, 13C, and 15N Chemical Shift Assignments for MazF(E24A) |
Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF
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Guang-Yao Li, Klaus P Hoeflich, Masayori Inouye, Mitchell Chan, Mitsuhiko Ikura, Tapas K Mal, Yonglong Zhang |
6700 | Chemical Shifts: 1 set |
Resonance Assignments of 30 kDa complexes of TFIID subunit TAF1 with TATA-binding protein |
Resonance Assignments of 30 kDa Complexes of TFIID Subunit TAF1 with TATA-binding Protein
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Dingjiang Liu, Le Zheng, Mitsuhiko Ikura, Tapas K Mal, Tetsuro Kokubo, Yoshihiro Nakatani, Yutaka Masutomi |
6702 | Chemical Shifts: 1 set |
Resonance assignments of 30 kDa complexes of TFIID subunit TAF1 with TATA-binding protein |
Resonance Assignments of 30 kDa Complexes of TFIID Subunit TAF1 with TATA-binding Protein
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Dingjiang Liu, Le Zheng, Mitsuhiko Ikura, Tapas K Mal, Tetsuro Kokubo, Yoshihiro Nakatani, Yutaka Masutomi |
5161 | Chemical Shifts: 1 set |
Characterization of the ATP-binding Domain of the Sarco(endo)plasmic Reticulum Ca (2+) -ATPase: Probing Nucleotide Binding By Multidimensional NMR |
Characterization of the ATP-binding Domain of the Sarco(endo)plasmic Reticulum Ca(2+)-ATPase: Probing Nucleotide Binding By Multidimensional NMR
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David H MacLennan, Masatsune Kainosho, Mitsuhiko Ikura, Mona Abu-Abed, Tapas Mal |
4457 | Chemical Shifts: 1 set |
Sequence-specific assignments and partial unfolding of extracellular domains II and III of E-cadherin. |
Letter to the Editor: Sequence-specific resonance assignments and partial unfolding of extracellular domains II and III of E-cadherin
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Frances K Tong, Jean-Rene Alattia, Kit I Tong, Mitsuhiko Ikura |
4380 | Chemical Shifts: 1 set |
1H, 15N and 13C Resonance Assignments and Monomeric Structure of the Amino-Terminal Extracellular Domain of Epithelial Cadherin |
1H, 15N and 13C Resonance Assignments and Monomeric Structure of the Amino-Terminal Extracellular Domain of Epithelial Cadheri
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Cyril M Kay, Kit I Tong, Michael Overduin, Mitsuhiko Ikura |
4270 | Chemical Shifts: 2 sets |
Chemical Shift Assignment of Ca2+/calmodulin (1H, 13C, and 15N) Complexed with Its Binding Domain from Rat Ca2+/calmodulin Dependent Protein Kinase Kinase (1H). |
A Novel Target Recognition Revealed by Calmodulin in Complex with Ca2+-calmodulin-dependent Kinase Kinase
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Hiroshi Tokumitsu, Hiroyuki Kurihara, Mark B Swindells, Masanori Osawa, Masaya Orita, Mitsuhiko Ikura, Tadao Shibanuma, Toshio Furuya |
4056 | Chemical Shifts: 2 sets |
Solution Structure of Calmodulin-W-7 Complex: The Basis of Diversity in Molecular Recognition |
Solution Structure of Calmodulin-W-7 Complex: The Basis of Diversity in Molecular Recognition
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Furuya Toshio, Ikura Mitsuhiko, Jun Tanikawa, Mark B Swindells, Masanori Osawa, Mase Toshiyasu, Tanaka Toshiyuki |
4030 | Chemical Shifts: 1 set |
Refinement of the Solution Structure of Calcium-Free, Myristoylated Recoverin |
Differential isotype labeling strategy for determining the structure of myristoylated recoverin by NMR spectroscopy
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James B Ames, Lubert Stryer, Masatsune Kainosho, Mitsuhiko Ikura, Toshiyuki Tanaka |
1634 | Chemical Shifts: 1 set |
Triple-Resonance Multidimensional NMR Study of Calmodulin Complexed with the Binding Domain of Skeletal Muscle Myosin Light-Chain Kinase: Indication of a Conformational Change in the Central Helix |
Triple-Resonance Multidimensional NMR Study of Calmodulin Complexed with the Binding Domain of Skeletal Muscle Myosin Light-Chain Kinase: Indication of a Conformational Change in the Central Helix
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Ad Bax, Lewis E Kay, Marie Krinks, Mitsuhiko Ikura |
2436 | Chemical Shifts: 1 set |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change
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Koichi Yagi, Kunio Hikichi, Michio Yazawa, Mitsuhiko Ikura, Toshiaki Mikuni, Toshifumi Hiraoki |
2437 | Chemical Shifts: 1 set |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change
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Koichi Yagi, Kunio Hikichi, Michio Yazawa, Mitsuhiko Ikura, Toshiaki Mikuni, Toshifumi Hiraoki |
2438 | Chemical Shifts: 1 set |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change
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Koichi Yagi, Kunio Hikichi, Michio Yazawa, Mitsuhiko Ikura, Toshiaki Mikuni, Toshifumi Hiraoki |
2439 | Chemical Shifts: 1 set |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change
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Koichi Yagi, Kunio Hikichi, Michio Yazawa, Mitsuhiko Ikura, Toshiaki Mikuni, Toshifumi Hiraoki |
2440 | Chemical Shifts: 1 set |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change
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Koichi Yagi, Kunio Hikichi, Michio Yazawa, Mitsuhiko Ikura, Toshiaki Mikuni, Toshifumi Hiraoki |
1648 | Chemical Shifts: 1 set |
Triple-Resonance Multidimensional NMR Study of Calmodulin Complexed with the Binding Domain of Skeletal Muscle Myosin Light-Chain Kinase: Indication of a Conformational Change in the Central Helix |
Triple-Resonance Multidimensional NMR Study of Calmodulin Complexed with the Binding Domain of Skeletal Muscle Myosin Light-Chain Kinase: Indication of a Conformational Change in the Central Helix
|
Ad Bax, Lewis E Kay, Marie Krinks, Mitsuhiko Ikura |
2435 | Chemical Shifts: 1 set |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change |
Nuclear Magnetic Resonance Studies on Calmodulin: Calcium-Induced Conformational Change
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Koichi Yagi, Kunio Hikichi, Michio Yazawa, Mitsuhiko Ikura, Toshiaki Mikuni, Toshifumi Hiraoki |
547 | Chemical Shifts: 1 set |
A Novel Approach for Sequential Assignment of 1H, 13C, and 15N Spectra of Larger Proteins: Heteronuclear Triple-Resonance Three-Dimensional NMR Spectroscopy. Application to Calmodulin |
A Novel Approach for Sequential Assignment of 1H, 13C, and 15N Spectra of Larger Proteins: Heteronuclear Triple-Resonance Three-Dimensional NMR Spectroscopy. Application to Calmodulin
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Ad Bax, Lewis E Kay, Mitsuhiko Ikura |