BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Entry ID Data summary Entry Title Citation Title Authors
31009 Chemical Shifts: 1 set
DENV1 SLA three-way junction RNA (DenvSLAsh) Structure of the Dengue Virus RNA Promoter Download bibtex for citation iamge G Varani, Y T Sun
31008 Chemical Shifts: 1 set
DENV1 SLA RNA (DenvSLATL) Structure of the Dengue Virus RNA Promoter Download bibtex for citation iamge G Varani, Y T Sun
30853 Chemical Shifts: 1 set
Denv1 5'UTR Stem3 Structure of the Dengue Virus RNA Promoter Download bibtex for citation iamge G Varani, Y T Sun
30665 Chemical Shifts: 1 set
NMR assignment and RNA structure of 5' UTR region stem loop from West Nile Virus NMR structure of Dengue West Nile viruses stem-loop B: A key cis-acting element for flavivirus replication Download bibtex for citation iamge G Varani, S Sharma
30622 Chemical Shifts: 1 set
Solution Structure of lncRNA (LINK-A) 20-nt Hexaloop Hairpin Structure of the lncRNA LINK-A Hexaloop Hairpin in PI(3,4,5)P3 Interaction Download bibtex for citation iamge A Y Amado, G Varani, M Walker
30560 Chemical Shifts: 1 set
Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation (WT apical loop) Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun Download bibtex for citation iamge D Albin, G Varani, L Cominsky, M Shortridge, M Walker
30533 Chemical Shifts: 1 set
Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun Download bibtex for citation iamge D Albin, G Varani, L Cominsky, M Shortridge, M Walker
30452 Chemical Shifts: 2 sets
Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb Download bibtex for citation iamge A Davidson, A J Jones, E Arts, G Varani, J A Robinson, J Bogdanovic, J Karn, M D Shortridge, P T Wille
30360 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design10.2 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30357 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design8.2 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30358 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design9.1 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30359 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design10.1 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30361 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design11_ss Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30362 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design12_ss Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30363 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design14_ss Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30364 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design7.2 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30365 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design7.3a Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30366 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design7.3a Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30355 Chemical Shifts: 1 set
Solution structure of de novo macrocycle Design8.1 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30356 Chemical Shifts: 1 set
Solution structure of de novo macrocycle design7.1 Comprehensive computational design of ordered peptide macrocycles. Download bibtex for citation iamge D A Silva, D Baker, D E Kim, F Pardo-Avila, G Bhardwaj, G Varani, I K Webb, J N Adkins, J R Cort, M D Shortridge, P Hosseinzadeh, S A Rettie, T W Craven, V K Mulligan, Y M Ibrahim
30334 Chemical Shifts: 1 set
H, 13C, and 15N Chemical Shift Assignments and structure of Thioredoxin from Mycobacterium thermoresistibile ATCC 19527 and NCTC 10409 1H, 13C, and 15N Chemical Shift Assignments and structure of Thioredoxin from Mycobacterium thermoresistibile ATCC 19527 and NCTC 10409 Download bibtex for citation iamge C T Tang, F Y Yang, G V Varani
34167 Chemical Shifts: 1 set
Spectral_peak_list: 3 sets
Solution structure of domain III (DIII)of Zika virus Envelope protein A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential. Download bibtex for citation iamge A Cavalli, A Lanzavecchia, A Rubio, D A Espinosa, D Corti, E Cameroni, E Harris, E Vicenzi, E XY Lim, F Sallusto, F Zatta, G Fibriansah, I Pagani, J Shi, J Wang, K Stettler, L Simonelli, L Varani, M Bardelli, M Beltramello, M Foglierini, M Pedotti, O Zerbe, R Hewson, S Bianchi, S Dowall, S Jaconi, S Jurt, S M Lok, S Pullan, T Barca, T S Ng, V Broccoli, V Graham
30290 Chemical Shifts: 1 set
NMR Assignment and Structure of Thioredoxin (Rv1471 ortholog) from Mycobacterium smegmatis ATCC 700084 / mc(2)155 Assignment and Structure of Thioredoxin (Rv1471 ortholog) type protein from Mycobacterium smegmatis ATCC 700084 / mc(2)155 Download bibtex for citation iamge G Varani, R P Barnwal
30258 Chemical Shifts: 2 sets
Structure of wild type pre-miR21 apical loop A macrocyclic peptide ligand binds the oncogenic microRNA-21 precursor and suppresses Dicer processing. Download bibtex for citation iamge G Varani, M D Shortridge, M J Walker, T Pavelitz, W Yang, Y Chen
30257 Chemical Shifts: 1 set
Structure of wild type pre-miR21 apical loop A macrocyclic peptide ligand binds the oncogenic microRNA-21 precursor and suppresses Dicer processing. Download bibtex for citation iamge G Varani, M D Shortridge, M J Walker, T Pavelitz, W Yang, Y Chen
30161 Chemical Shifts: 1 set
Solution structure of response regulator protein from Burkholderia multivorans Solution structure of response regulator protein from Burkholderia multivorans Download bibtex for citation iamge F Yang, G Varani, R Barnwal, Y-B Lim
30079 Chemical Shifts: 1 set
Spectral_peak_list: 4 sets
NMR structure of Uncharacterized protein from Pseudomonas aeruginosa PAO1 NMR structure of Uncharacterized protein from Pseudomonas aeruginosa PAO1 Download bibtex for citation iamge G Varani, R P Barnwal
30051 Chemical Shifts: 2 sets
Intermediate state lying on the pathway of release of Tat from HIV-1 TAR. Structure of a low-population binding intermediate in protein-RNA recognition Download bibtex for citation iamge A N Borkar, C Camilloni, F A Aprile, G Varani, M F Bardaro, M Vendrucolo
30049 Chemical Shifts: 2 sets
Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat Structure of a low-population binding intermediate in protein-RNA recognition Download bibtex for citation iamge A N Borkar, C Camilloni, F A Aprile, G Varani, M F Bardaro, M Vendrucolo
30046 Chemical Shifts: 2 sets
Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat Structure of a low-population binding intermediate in protein-RNA recognition Download bibtex for citation iamge A N Borkar, C Camilloni, F A Aprile, G Varani, M F Bardaro, M Vendrucolo
18216 Chemical Shifts: 1 set
NMR structure of an acyl-carrier protein from Rickettsia prowazekii.(Seattle Structural Genomics Center for Infectious Disease (SSGCID)) NMR structure of an acyl-carrier protein from Borrelia burgdorferi. Download bibtex for citation iamge G Varani, Ravi P Barnwal, Wesley C Van Voorhis
7382 Chemical Shifts: 1 set
NMR Structure of RRM-2 of Yeast NPL3 Protein Structure of the yeast SR protein Npl3 and Interaction with mRNA 3'-end processing signals Download bibtex for citation iamge C Moore, G Varani, M Bucheli, P Deka, S Buratowski
7383 Chemical Shifts: 1 set
NMR Structure of RRM-1 of Yeast NPL3 Protein Structure of the yeast SR protein Npl3 and Interaction with mRNA 3'-end processing signals Download bibtex for citation iamge C Moore, G Varani, M Bucheli, P Deka, S Buratowski
7367 Chemical Shifts: 1 set
Solution structure of a Beta-Hairpin Peptidomimetic Inhibitor of the BIV Tat-Tar Interaction Structure-guided peptidomimetic design leads to nanomolar beta-hairpin inhibitors of the Tat-TAR interaction of bovine immunodeficiency virus Download bibtex for citation iamge G Varani, J A Robinson, K Moehle, K Patora, R LA Dias, Z Athanassiou
7102 Chemical Shifts: 1 set
High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design Download bibtex for citation iamge B Kuhlman, C Corrent, D Baker, E A Merritt, G Dantas, G Varani, J J Havranek, N G Isern, S L Reichow, Z M Eletr
7101 Chemical Shifts: 1 set
Mistranslation of a computationally designed protein yields an exceptionally stable homodimer: Implications for protein evolution and engineering. Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: Implications for protein evolution and engineering. Download bibtex for citation iamge A L Watters, B Kuhlman, B L Stoddard, B M Lunde, D Baker, G Dantas, G Varani, J Lipfert, M Tompa, N G Isern, S Doniach, T Roseman, Z M Eletr
6846 Chemical Shifts: 1 set
NMR structural analysis of Nop10p from Saccharomyces cerevisiae The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs Download bibtex for citation iamge A R Ferre-D'Amare, G Varani, S L Reichow, T Hamma
6845 Chemical Shifts: 1 set
NMR Structural analysis of archaeal Nop10 The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs Download bibtex for citation iamge A R Ferre-D'Amare, G Varani, S L Reichow, T Hamma
5528 Chemical Shifts: 1 set
Solution structure of the complementary RNA promoter of influenza a virus Solution Structure of the Influenza A Virus cRNA Promoter: Implications for Differential Recognition of Viral Promoter Structures by RNA-dependent RNA Polymerase Download bibtex for citation iamge B-S Choi, C-J Park, G Varani, M-K Lee, S-H Bae
4894 Chemical Shifts: 2 sets
RNA recognition by a staufen double-stranded RNA-binding domain RNA recognition by a staufen double-stranded RNA-binding domain Download bibtex for citation iamge A Ramos, D R Micklem, D St Johnston, G Varani, J Adams, M Bycroft, M R Proctor, S Freund, S Grunert