BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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Entry ID Data summary Entry Title Citation Title Authors
52158 Chemical Shifts: 2 sets
NMR analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria Analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria Download bibtex for citation iamge Aritaka Nagadoi, Ayaka Oe, Chieko Tsuchiya, Eriko Chikaishi, Haruka Shirai, Hideo Akutsu, Ken-ichi Akagi, Masayuki Nishida, Miyu Hashiba, Satoko Akashi, Takahisa Ikegami, Tomoyo Takai, Toshio Yamazaki, Tsuyoshi Konuma, Yudai Yamada
26301 Chemical Shifts: 1 set
Crystal structure of higher plant heme oxygenase-1 and the mechanism of interaction with ferredoxin Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin Download bibtex for citation iamge Genji Kurisu, Hideaki Tanaka, Rei Tohda, Risa Mutoh, Taiko C Migita, Takahisa Ikegami, Tsuyoshi Konuma, Xuhong Zhang, Young-Ho Lee
26300 Chemical Shifts: 1 set
The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata Download bibtex for citation iamge Alba Silipo, Christine Addy, Hideaki Fujita, Jeremy RH Tame, Katsuya Takahashi, Kenichi Kamata, Kenji Mizutani, Roberta Marchetti, Sam-Yong Park, Takahisa Ikegami, Tsuyoshi Konuma, Yasuhiro Ozeki, Yuki Fujii
27865 Chemical Shifts: 1 set
Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Download bibtex for citation iamge Genji Kurisu, Giulia M Marchetti, Hideaki Tanaka, Johann S Brandenburg, Karen Zinzius, Mamoru Sato, Martin Scholz, Michael Hippler, Ratana Charoenwattanasatien, Susann Wicke, Takahisa Ikegami, Takashi Matsumoto, Takashi Oda
27860 Chemical Shifts: 1 set
Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Download bibtex for citation iamge Genji Kurisu, Giulia M Marchetti, Hideaki Tanaka, Johann S Brandenburg, Karen Zinzius, Mamoru Sato, Martin Scholz, Michael Hippler, Ratana Charoenwattanasatien, Susann Wicke, Takahisa Ikegami, Takashi Matsumoto, Takashi Oda
12019 Chemical Shifts: 1 set
Solid-state NMR C-13 and N-15 chemical shifts of the chitin binding domain of chitinase A1 from Bacillus circulans WL-12 A novel chitin-binding mode of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12 revealed by solid-state NMR. Download bibtex for citation iamge Hayuki Sugimoto, Hideo Akutsu, Hiroki Tanaka, Izumi Yabuta, Masashi Hara, Takahisa Ikegami, Takeshi Watanabe, Toshimichi Fujiwara
26047 Chemical Shifts: 1 set
Lysine dimethylated FKBP12 NMR Observation of Protein Surface Salt Bridges at Neutral pH Download bibtex for citation iamge Chojiro Kojima, Izuru Ohki, Jukab Sebera, Kyoko Furuita, Naohiro Kobayashi, Takahisa Ikegami, Toshihiko Sugiki, Toshimichi Fujiwara, Vladimir Sychrovsky, Yoshikazu Hattori, Yoshiyuki Tanaka
11596 Chemical Shifts: 1 set
Gallium ferredoxin X-ray Structure and Nuclear Magnetic Resonance Analysis of the Interaction Sites of the Ga-substituted Cyanobacterial Ferredoxin Download bibtex for citation iamge Genji Kurisu, Hisako Kubota-Kawai, Kanako Shinmura, Marc M Nowaczyk, Matthias Rogner, Norifumi Muraki, Risa Mutoh, Takahisa Ikegami, Toshiharu Hase, Young-Ho H Lee
25732 Chemical Shifts: 1 set
Solution structure of the cyanobacterial cytochrome b6f complex subunit PetP The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution Download bibtex for citation iamge Aritaka Nagadoi, Matthias Rogner, Raphael Stoll, Sascha Rexroth, Sebastian Veit, Takahisa Ikegami
11584 Chemical Shifts: 1 set
Backbone 1H, 13C, and 15N Chemical Shift Assignments for c-Myb R2R3 C130I Molecular strategy of c-Myb DNA-binding domain for function: Low-populated unfolding species revealed from temperature-dependent (NMR) studies Download bibtex for citation iamge Akihiro Maeno, Kazumasa Sakurai, Kazuyuki Akasaka, Masayuki Oda, Satomi Inaba, Sunilkumar Narayanan Puthenpurackal, Takahisa Ikegami
11585 Chemical Shifts: 1 set
Backbone 1H, 13C, and 15N Chemical Shift Assignments for c-Myb R2R3 V103L/C130I Molecular strategy of c-Myb DNA-binding domain for function: Low-populated unfolding species revealed from temperature-dependent (NMR) studies Download bibtex for citation iamge Akihiro Maeno, Kazumasa Sakurai, Kazuyuki Akasaka, Masayuki Oda, Satomi Inaba, Sunilkumar Narayanan Puthenpurackal, Takahisa Ikegami
19971 Chemical Shifts: 1 set
CupS Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus Download bibtex for citation iamge Annika Korste, Hannes Wulfhorst, Marc M Nowaczyk, Raphael Stoll, Takahisa Ikegami
11546 Chemical Shifts: 1 set
1H, 15N and 13C resonance assignments of the conserved domain in the middle of Schizosaccharomyces pombe SAPK-interacting protein 1 Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints Download bibtex for citation iamge Chojiro Kojima, Kazuhiro Shiozaki, Kyoko Furuita, Naohiro Kobayashi, Saori Kataoka, Takahisa Ikegami, Toshimichi Fujiwara, Yoshikazu Hattori
11531 Chemical Shifts: 1 set
Solution structure of the chitin-binding domain of Chi18aC from Streptomyces coelicolor Solution structure of the Chitin-binding domain of chitinase Chi18aC from Streptomyces coelicolor Download bibtex for citation iamge Akiko Okumura, Daisuke Yokogawa, Eriko Chikaishi, Junji Morita, Kazushi Suzuki, Keiko Akagi, Michio Uemura, Nobuaki Yamada, Sachiko Yoshio, Takahisa Ikegami, Takeshi Watanabe, Tomoyo Takai, Young-Ho Lee
11530 Chemical Shifts: 1 set
chitin binding domain1 Solution structure of the chitin-binding domain 1 (ChBD1) of a hyperthermophilic chitinase from Pyrococcus furiosus Download bibtex for citation iamge Koichi Uegaki, Shouhei Mine, Takaaki Sato, Takahisa Ikegami, Tsutomu Nakamura
11508 Chemical Shifts: 1 set
Solution structure of the SH2 domain of Csk in complex with a phosphopeptide from Cbp A new SH2 domain binding mode of C-terminal Src kianse to Cbp/PAG" Download bibtex for citation iamge Atsushi Nakagawa, Chitose Oneyama, Daisuke Yokogawa, Hiroaki Tanaka, Ken-ichi Akagi, Marc-Werner Debenecker, Masakazu Tanaka, Masato Okada, Takahisa Ikegami, Takashi Kanou, Young-Ho Lee, Yuichi Sasaki
11424 Chemical Shifts: 1 set
Interplay between phosphatidyl-inositol-phosphates and claudins upon binding to the 1st PDZ domain of zonula ocludens 1 (1)H, (13)C, and (15)N resonance assignment of the first PDZ domain of mouse ZO-1. Download bibtex for citation iamge Hidekazu Hiroaki, Kaori Satomura, Mikio Furuse, Natsuko Goda, Ryo Taniguchi, Takahisa Ikegami, Yoshitaka Umetsu
11420 Chemical Shifts: 1 set
NMR structure of vasoactive intestinal peptide in DPC Micelle Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments. Download bibtex for citation iamge Hidekazu Hiroaki, Masahiro Shirakawa, Natsuko Goda, Takahisa Ikegami, Takeshi Tenno, Yoshitaka Umetsu
11419 Chemical Shifts: 1 set
NMR structure of vasoactive intestinal peptide in Methanol Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments. Download bibtex for citation iamge Hidekazu Hiroaki, Masahiro Shirakawa, Natsuko Goda, Takahisa Ikegami, Takeshi Tenno, Yoshitaka Umetsu
11081 Chemical Shifts: 1 set
Solution structure of the human DDEF1 SH3 domain Structural basis of the recognition of the SAMP motif of adenomatous polyposis coli by the Src-homology 3 domain. Download bibtex for citation iamge Chiyuki Matsui, Shuji Kaieda, Takahisa Ikegami, Yuko Mimori-Kiyosue
11082 Chemical Shifts: 1 set
Solution structure of the complex between the DDEF1 SH3 domain and the APC SAMP1 motif Structural basis of the recognition of the SAMP motif of adenomatous polyposis coli by the Src-homology 3 domain. Download bibtex for citation iamge Chiyuki Matsui, Shuji Kaieda, Takahisa Ikegami, Yuko Mimori-Kiyosue
11075 Chemical Shifts: 1 set
1H, 13C, and 15N Chemical Shift Assignments for N-terminal domain of kp60 A common substrate recognition mode conserved between katanin p60 and VPS4 governs microtubule severing and membrane skeleton reorganization. Download bibtex for citation iamge Hidehito Tochio, Hidekazu Hiroaki, Kohei Akiyama, Masahiro Shirakawa, Naoko Iwaya, Natsuko Goda, Shogo Mase, Takahisa Ikegami, Takeshi Tenno, Yohta Kuwahara, Yoshie Fujiwara
11060 Chemical Shifts: 1 set
Unusual Thermal Disassembly of the SPFH Domain Oligomer from Pyrococcus horikoshii Unusual Thermal Disassembly of the SPFH Domain Oligomer from Pyrococcus horikoshii Download bibtex for citation iamge Hidekazu Hiroaki, Hideshi Yokoyama, Ikuo Matsui, Satoru Unzai, Takahisa Ikegami, Takashi Nagata, Yohta Kuwahara, Yoko Hiroaki, Yoshinori Fujiyoshi
7059 Chemical Shifts: 1 set
1H, 13C, and 15N Resonance Assignments of the Pyrazinamidase from Mycobacterium Tuberculosis 1H, 13C and 15N Resonance Assignments of the Pyrazinamidase from Mycobacterium Tuberculosis Download bibtex for citation iamge Bong-Jin Lee, Hideo Akutsu, Se-Won Suh, Takahisa Ikegami, Won-Je Kim, Woo-Sung Son, Yong-Jin Kim
10005 Chemical Shifts: 1 set
1H, 13C, and 15N Chemical Shift Assignments for ChitinaseC chitin binding domain Identification of the Substrate Interaction Region of the Chitin-Binding Domain of Streptomyces griseus Chitinase C Download bibtex for citation iamge Eriko Chikaishi, Hideo Akutsu, Ikegami Takahisa, Jun Watanabe, Ken-ichi Akagi, Masashi Hara, Takamasa Nonaka, Takeshi Watanabe, Tohru Yamaguchi, Yuichiro Kezuka
6829 Chemical Shifts: 1 set
Chemical shift assignments for Chitin-binding Domain of Hyperthermophilic Chitinase from Pyrococcus furiosus NMR assignment of the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus Download bibtex for citation iamge Kazuhiko Ishikawa, Koichi Uegaki, Shouhei Mine, Takahisa Ikegami, Tsutomu Nakamura, Yoshihisa Hagihara
6695 Chemical Shifts: 1 set
Backbone 1H, 13C and 15N Chemical Shift Assignments for Ferredoxin-NADP+ Reductase Identification of the N- and C-Terminal Substrate Binding Segments of Ferredoxin-NADP+ Reductase by NMR Download bibtex for citation iamge Kohsuke Tamura, Lee Young-Ho, Maeda Masahiro, Masaru Hoshino, Masato Nakayama, Takahisa Ikegami, Toshiharu Hase, Toshio Yamazaki, Yuji Goto
6489 Chemical Shifts: 1 set
Chemical shift assignments for subunit c of the F1Fo ATP Synthase from Bacillus PS3 A New Solution Structure of ATP Synthase Subunit c from Thermophilic Bacillus PS3, Suggesting a Local Conformational Change for H(+)-Translocation Download bibtex for citation iamge Hideo Akutsu, Masasuke Yoshida, Takahisa Ikegami, Takayuki Nakano, Toshiharu Suzuki
6441 Chemical Shifts: 1 set
Chemical shift assignments for human Orexin-A Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor. Download bibtex for citation iamge Atsushi Nakagawa, Hideo Akutsu, Katsuya Nagai, Mutsuko Nakano, Saburo Aimoto, Takahisa Ikegami, Takao Takaya, Tomoyo Takai
6405 Chemical Shifts: 1 set
Backbone 1H, 13C, and 15N Chemical Shift Assignments for the first cadherin domain of Cadherin-related neuronal receptor(CNR)/ Protocadherin alpha Letter to the Editor: 1H, 13C and 15N resonance assignments of the first cadherin domain of Cadherin-related neuronal receptor (CNR)/protocadherin alpha. Download bibtex for citation iamge Hideo Akutsu, Hirofumi Morishita, Keiko Udaka, Masataka Umitsu, Takahisa Ikegami, Takeshi Yagi, Yoji Murata
5178 Chemical Shifts: 1 set
Solution Structure of the Fibronectin type III Domain from Bacillus circulans WL-12 Chitinase A1 Solution Structure of the Fibronectin type III Domain from Bacillus circulans WL-12 Chitinase A1 Download bibtex for citation iamge JunGoo Jee, Masahiro Shirakawa, Masayuki Hashimoto, Mitsunori Ikeguchi, Takahisa Ikegami, Takeshi Kawabata, Takeshi Watanabe
4857 Chemical Shifts: 1 set
Coupling Constants: 1 set
Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli Download bibtex for citation iamge Izuru Ohki, Junya Hirayama, Masahiro Shirakawa, Takahisa Ikegami, Takeshi Mizuno, Terumasa Okada
4742 Chemical Shifts: 1 set
Coupling Constants: 1 set
Proton and nitrogen chemical shift assignments for the chitin-binding domain of Bacillus circulans WL-12 Chitinase A1 Solution Structure of the Chitin-Binding Domain of Bacillus circulans WL-12 Chitinase A1 Download bibtex for citation iamge Masahiro Shirakawa, Masayuki Hashimoto, Shizuka Seino, Takahisa Ikegami, Takeshi Watanabe, Terumasa Okada
4588 Chemical Shifts: 1 set
Coupling Constants: 1 set
Proton and nitrogen chemical shift assignments for the chitin-binding domain of Bacillus circulans WL-12 Chitinase A1 Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1 Download bibtex for citation iamge Masahiro Shirakawa, Masayuki Hashimoto, Shizuka Seino, Takahisa Ikegami, Takeshi Watanabe, Terumasa Okada
4249 Chemical Shifts: 1 set
Coupling Constants: 1 set
Solution Structure of the DNA- and RPA-binding Domain of the Human Repair Factor XPA Solution Structure of the DNA- and RPA-binding Domain of the Human Repair Factor XPA Download bibtex for citation iamge Isao Kuraoka, Kiyoji Tanaka, Kosuke Morikawa, Masafumi Saijo, Masahiro Shirakawa, Naohiko Kodo, Takahisa Ikegami, Yoshimasa Kyogoku